DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Ir75c and GluRIIC

DIOPT Version :9

Sequence 1:NP_649013.3 Gene:Ir75c / 39983 FlyBaseID:FBgn0261401 Length:623 Species:Drosophila melanogaster
Sequence 2:NP_608557.4 Gene:GluRIIC / 33275 FlyBaseID:FBgn0046113 Length:940 Species:Drosophila melanogaster


Alignment Length:731 Identity:130/731 - (17%)
Similarity:241/731 - (32%) Gaps:245/731 - (33%)


- Green bases have known domain annotations that are detailed below.


  Fly    23 MVFHCWSIKEAFPLVEMLNQN---GIFSQYIDVQNPDNLANV--HKEYLDSDLVRLGVFLDLGCD 82
            :|..|    |...|||:||.:   |:..||    |...|.|:  :.::|:          :|..|
  Fly   213 VVLDC----EPNMLVELLNSSTEFGLTGQY----NHIFLTNLETYTDHLE----------ELAAD 259

  Fly    83 KAELVTNQSSRARLYNQN--LHWLLYDEAGNFTKLTQLFEGANLSLNADVTYVSREDEERFILHD 145
            ......|.::...|.|.:  .:.|.|   |..|:            ..::.|.| .|..|.::||
  Fly   260 NETFAVNITAARLLVNPDPPPYSLPY---GYVTQ------------RDNIVYES-SDPPRTLIHD 308

  Fly   146 VYNKGSHLGGKL---------------NITVDQTLQCNRSHCQVKEYLSELHLRPRLQHRMDLSS 195
            :.:....|..:.               .||.|......|:.. :..||:.|     ::....:::
  Fly   309 LIHDALQLFAQSWRNASFFYPDRMVVPRITCDFAASGGRTWA-MGRYLARL-----MKGTSGVNN 367

  Fly   196 VTFRLAALVSVLPINSSEEEL-----------------------LEFLNSDRDSHMDSISRIGNR 237
            ..||    .|:|..:...:.:                       :..||.|..:....|.|:..|
  Fly   368 TNFR----TSILQFDEDGQRITFNIEVYDPLDGIGIAIWDPRGQITQLNVDVKAQKKMIYRVATR 428

  Fly   238 -----------------------------LIMHTQEILGFKLHYIWCGTWSVQ--------DAFG 265
                                         ||......:||:  |::......|        ..:.
  Fly   429 IGPPYFSYNETARELNLTGNALYQGYAVDLIDAIARHVGFE--YVFVPVADQQYGKLDKETKQWN 491

  Fly   266 GAIGMLTNESAE--LC--------------TTPFVPSWNRLHYLHPMTEQAQFR-AVCMFRTPHN 313
            |.||.:.|..|.  :|              |.||:                |.. ::..:::||.
  Fly   492 GIIGEIINNDAHMGICDLTITQARKTAVDFTVPFM----------------QLGVSILAYKSPHV 540

  Fly   314 AGIKAAVFLEPFMPSVWFAFAGLLIFAGVLL-----------WMIFH--------LERHWMQRCL 359
            .....| :|.||...||. :..:.:|....|           |...|        ||..|     
  Fly   541 EKTLDA-YLAPFGGEVWI-WILISVFVMTFLKTIVARISKMDWENPHPCNRDPEVLENQW----- 598

  Fly   360 DFIPSLLSSCLISFGAACIQGSYLMPKSAGGRLAFIAVMLTSFLMYNYYTSIVVSTLLGSPVRSN 424
                .:.::..::..:....|..::|:|...|:......:.:.::.|.||:.:.:.|..|.:..:
  Fly   599 ----RIHNTGWLTVASIMTAGCDILPRSPQVRMFEATWWIFAIIIANSYTANLAAFLTSSKMEGS 659

  Fly   425 IRTIQQLADSSLDVGFDTVPFTKTY--LVSSPRPDIRSLYKQKVESKRDPNSVWLSPEEGVIRVR 487
            |..::.|: :...|.|.|:....||  |..|.....|..:  .:.:..||::......|||.|||
  Fly   660 IANLKDLS-AQKKVKFGTIYGGSTYNLLADSNETVYRLAF--NLMNNDDPSAYTKDNLEGVDRVR 721

  Fly   488 DQPG-FVYTSEASFM-YH-------------FVEKHYLPREISDLNEIILRPESAVYGMVHLNST 537
            ...| :::..|.:.: ||             |.||||                 |:  .|...:.
  Fly   722 KNRGDYMFLMETTTLEYHREQNCDLRSVGEKFGEKHY-----------------AI--AVPFGAE 767

  Fly   538 YRQLLTQLQVRMLETG-ITSKQSRFFSKTKLHTFSN---------SFVIQVGMEYAAPLFISLLV 592
            ||..|:...:::.|.| :...:.:::.......|..         :|....|:.|.  |:..:|:
  Fly   768 YRSNLSVAILKLSERGELYDLKQKWWKNPNASCFEEPDPDATPDMTFEELRGIFYT--LYAGILI 830

  Fly   593 AYFLAL---LILILEI 605
            |:.:.:   |:.:.::
  Fly   831 AFLIGITEFLVYVQQV 846

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ir75cNP_649013.3 Lig_chan 328..553 CDD:306551 51/260 (20%)
GluRIICNP_608557.4 PBP1_iGluR_Kainate 26..404 CDD:107377 42/234 (18%)
Periplasmic_Binding_Protein_Type_1 <279..363 CDD:299141 18/105 (17%)
PBP2_iGluR_Kainate 423..794 CDD:270432 76/421 (18%)
Lig_chan 554..828 CDD:278489 57/307 (19%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45462592
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - P PTHR18966
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
32.940

Return to query results.
Submit another query.