DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Ir75c and Grin2c

DIOPT Version :9

Sequence 1:NP_649013.3 Gene:Ir75c / 39983 FlyBaseID:FBgn0261401 Length:623 Species:Drosophila melanogaster
Sequence 2:NP_036707.3 Gene:Grin2c / 24411 RGDID:2739 Length:1250 Species:Rattus norvegicus


Alignment Length:572 Identity:105/572 - (18%)
Similarity:190/572 - (33%) Gaps:170/572 - (29%)


- Green bases have known domain annotations that are detailed below.


  Fly    96 LYNQNLHWLLYDEAGNFTKLTQLFEGANLSLNADVTYVSREDEERFILHDVYNKGSHLGGKLNIT 160
            ||.:...|..|.     |.|..:.:..:|:       |:..:|..|::.:..:.|:  ||    .
  Rat   393 LYMKYPVWPRYS-----TSLQPVVDSRHLT-------VATLEERPFVIVESPDPGT--GG----C 439

  Fly   161 VDQTLQCNRSHCQVKEYLSELHLRPRLQHRMDLSSVTFRLAALVSVLPINSSEEELLEFLNSDRD 225
            |..|:.|.|   |.....|...|.|..:    |....|.:..|          ::|.:.:....|
  Rat   440 VPNTVPCRR---QSNHTFSSGDLTPYTK----LCCKGFCIDIL----------KKLAKVVKFSYD 487

  Fly   226 SHMDSISRIGNRLIMHTQEILGFKLHYIWCGTWSVQDAF----GGAIGMLT--NESAELC--TTP 282
            .::.:..:.|.|            :..:|.|  .:.:.:    ..|||.||  .|.:|:.  :.|
  Rat   488 LYLVTNGKHGKR------------VRGVWNG--MIGEVYYKRADMAIGSLTINEERSEIIDFSVP 538

  Fly   283 FVPSWNRLHYLHPMTEQAQFRAVCMFRTPHNAGIKAAVFLEPFMPSVW-FAFAGLLIFAGVLLWM 346
            ||.:                 .:.:..:..|..:..:.||||:.|:|| ..|...|....:.::|
  Rat   539 FVET-----------------GISVMVSRSNGTVSPSAFLEPYSPAVWVMMFVMCLTVVAITVFM 586

  Fly   347 IFHLERHWMQRCLDFIPSLLSSCLISFGAACIQG------SYLMPKSA----------------- 388
            ..:           |.|       :|:.....:|      |:.:.||.                 
  Rat   587 FEY-----------FSP-------VSYNQNLTKGKKPGGPSFTIGKSVWLLWALVFNNSVPIENP 633

  Fly   389 GGRLAFIAVMLTSFLMYNYYTSIVVSTLLGSPVRSNIRTIQQLADSSLD--------VGFDTVPF 445
            .|..:.|.|::.:|....:..|...:..........|.|:..|:|....        ..|.|||.
  Rat   634 RGTTSKIMVLVWAFFAVIFLASYTANLAAFMIQEQYIDTVSGLSDKKFQRPQDQYPPFRFGTVPN 698

  Fly   446 TKTYLVSSPRPDIRSLYKQKVE-SKRDPNSVWLSPEEGVIRVRDQPGFVYTSEASFMYHFVEKHY 509
            ..|  ..:.|.:.|.::...|: ::|.......|.:.|.:             .:|:|.....:|
  Rat   699 GST--ERNIRSNYRDMHTHMVKFNQRSVEDALTSLKMGKL-------------DAFIYDAAVLNY 748

  Fly   510 LPREISDLNEIILRP----ESAVYGMVHLNSTY---------RQLLTQLQVRMLET----GITSK 557
            :..:......:.:..    .:..||:.....::         .|||...:.:.|||    ||...
  Rat   749 MAGKDEGCKLVTIGSGKVFATTGYGIAMQKDSHWKRAIDLALLQLLGDGETQKLETVWLSGICQN 813

  Fly   558 QSRFFSKTKLHTFSNSFVIQVGMEYAAPLFISLLVAYFLALLILILE--ICW 607
            :......:||           .::..|.:|..||||..||||:...|  :.|
  Rat   814 EKNEVMSSKL-----------DIDNMAGVFYMLLVAMGLALLVFAWEHLVYW 854

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ir75cNP_649013.3 Lig_chan 328..553 CDD:306551 43/274 (16%)
Grin2cNP_036707.3 PBP1_iGluR_NMDA_NR2 41..397 CDD:380601 2/3 (67%)
PBP2_iGluR_NMDA_Nr2 413..813 CDD:270436 85/493 (17%)
NMDAR2_C 850..>925 CDD:402274 1/5 (20%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C166349838
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG1052
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.830

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