DRSC/TRiP Functional Genomics Resources

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Protein Alignment Ir75c and glr-5

DIOPT Version :9

Sequence 1:NP_649013.3 Gene:Ir75c / 39983 FlyBaseID:FBgn0261401 Length:623 Species:Drosophila melanogaster
Sequence 2:NP_505244.1 Gene:glr-5 / 179251 WormBaseID:WBGene00001616 Length:932 Species:Caenorhabditis elegans


Alignment Length:665 Identity:137/665 - (20%)
Similarity:216/665 - (32%) Gaps:227/665 - (34%)


- Green bases have known domain annotations that are detailed below.


  Fly    37 VEMLNQNGIFS------QYIDVQN-------------PDNLA----------NVHKEYL--DSDL 70
            ||.|:|.||:.      :||||.:             .|::.          |...|.:  |.|:
 Worm    47 VEWLSQRGIYGDIDLVIEYIDVLDHYDAIKKACKMLEKDHIVALLGGSHAALNAQLERITDDLDI 111

  Fly    71 VRLGVFLDLGCDKAELVTNQSSRARLY----NQNLHW------LLYDEAGNFTKLTQLFEGANLS 125
            ..|....||..|..:...:...|.:|:    :...||      |:|:......:|.||.|...  
 Worm   112 PFLTAIDDLRTDMGKSKIDFWPRPQLFEAVVDMFTHWRWNRIVLVYEGDERIRRLEQLLESEE-- 174

  Fly   126 LNADVTYVSREDEERFILHDVYNKGSHLGGKLNITVDQTLQCNRSHCQVKEYLSELHLRPRLQHR 190
                  |.|    .||.|..|:: |.::               ::..|||| |.|.    ||.|:
 Worm   175 ------YAS----IRFYLIKVHD-GDYM---------------KAARQVKE-LEEC----RLLHK 208

  Fly   191 MDLS-------------SVTFRLAALVSVLPINSSEEELLE----FLNSDRD-SHMDSISRIGNR 237
            .|.|             :.||.||:|         :..|:|    ||.::.: |.||        
 Worm   209 KDCSEFSRLLVDMNPEHTYTFLLASL---------QMGLIELKHWFLLTNMELSTMD-------- 256

  Fly   238 LIMHTQEILGFKLHYIWCGTWSVQDAFGGAIGMLTNESAELCTTPFVPSWNRLHYLHPMTEQAQF 302
                 .|:..:. |..:...:.|...|     :..|..|          :|..|:...:||:   
 Worm   257 -----MELFRYN-HARFISPYPVDSTF-----LTENRDA----------FNFSHFKEHITEK--- 297

  Fly   303 RAVCMFRTPHNAGIKAAVFLEPFMPSVWFAFAGLLIFAGVLLWMIFHLERHWMQRCLDFIPSLLS 367
               ...:|.::..:|        |....|.|..:..||.|...:..|::       ::.:|..| 
 Worm   298 ---WAMKTDNSRNLK--------MMEAVFTFDAVYAFANVFNELSSHMQ-------MNDVPQTL- 343

  Fly   368 SCLISFGAACIQGSYLMPKSAGGRLAFIAVMLTSFLMYN--YYTSIVVSTLLGSPVRSNI-RTIQ 429
                     |.:.|....|...||      .|...:::|  :..|..:..|.|.|::||. ..||
 Worm   344 ---------CRKSSRNSRKYQHGR------SLIDNIVHNDLHGLSGDLRRLNGHPLKSNFSMRIQ 393

  Fly   430 QLADSSL--DVGFDTVPFTKTYLVSSPRPDIRSLYKQKVESKRDPNSVWLSPEEGVIRVRDQP-- 490
            .|..|..  |:|| ..|.|..::..|  .|.::..::.|:...:     |.|...|..:.::|  
 Worm   394 LLGYSGRLDDIGF-WEPATNVHVNMS--GDSKAQLQRNVQVSDE-----LKPHFRVTTIMERPYV 450

  Fly   491 ------------------------------GFVYTSEASFMYHFVEKHYLPREISDLNEIILRPE 525
                                          ||.||..|.....:....|.......:...|||.|
 Worm   451 MLKKNHYELDANSKFEGFCIDLLAELSKDLGFTYTIHAVKDGKYGNDKYGNGSWDGMMGEILRGE 515

  Fly   526 SAVYGMVHLNSTYRQL-LTQLQVRMLETGIT-------SKQSRFFSKTKLHTFSNSFVIQVGMEY 582
             |...:..|...||:. ........|..||:       .:|...||      |.|....|:....
 Worm   516 -AEMAVAPLTVNYRRSEAVDFTKPFLSLGISILYKVPDDQQPDLFS------FLNPLSWQIWTAI 573

  Fly   583 AAPLFISLLVAYFLA 597
            |..:....|..||:|
 Worm   574 ATSIITVTLGMYFVA 588

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ir75cNP_649013.3 Lig_chan 328..553 CDD:306551 52/262 (20%)
glr-5NP_505244.1 PBP1_iGluR_delta_like 26..418 CDD:107376 102/479 (21%)
ANF_receptor 38..377 CDD:279440 88/437 (20%)
PBP2_iGluR_Kainate 438..819 CDD:270432 30/158 (19%)
Lig_chan 568..855 CDD:278489 6/21 (29%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG1052
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR18966
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
32.910

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