DRSC/TRiP Functional Genomics Resources

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Protein Alignment Ir75c and Grin3b

DIOPT Version :9

Sequence 1:NP_649013.3 Gene:Ir75c / 39983 FlyBaseID:FBgn0261401 Length:623 Species:Drosophila melanogaster
Sequence 2:XP_006513350.1 Gene:Grin3b / 170483 MGIID:2150393 Length:1138 Species:Mus musculus


Alignment Length:437 Identity:86/437 - (19%)
Similarity:141/437 - (32%) Gaps:135/437 - (30%)


- Green bases have known domain annotations that are detailed below.


  Fly   228 MDSISRIGNRLIMHTQEILGFKLHYIWCGTW-SVQDA-FGGAIGMLTNESAELCTTPFVPSWNRL 290
            :|.:.|:...|      ...|:|:.:..|.: :::|. :.|.:|.|....|.:..|.|..:..|.
Mouse   561 IDLLERLAEDL------AFDFELYIVGDGKYGALRDGRWTGLVGDLLAGRAHMAVTSFSINSARS 619

  Fly   291 HYLHPMTEQAQFRAVCMFRTPHNAGIKAAVFLEPFMPSVWFAFAGLLIFAGVLLWMIFHLERHW- 354
            ..:...:.........|.||...|. ....|:.|...|:|..     :||.:.|..:|.....| 
Mouse   620 QVVDFTSPFFSTSLGIMVRTRDTAS-PIGAFMWPLHWSMWVG-----VFAALHLTALFLTLYEWR 678

  Fly   355 ---------MQRCLDF-IPSLLSSC-LISFGAACIQGSYLMPKSAGGRLAFIAVMLTSFLMYNYY 408
                     ..|...| ..|.|:.| .|.||...   |...||...||.......:...|:.:.|
Mouse   679 SPYGLTPRGRNRGTVFSYSSALNLCYAILFGRTV---SSKTPKCPTGRFLMNLWAIFCLLVLSSY 740

  Fly   409 TSIVVSTLLGSPVRSNIRTIQQLA---DSSLDVGFDTVPFTKTYLVSSPRPDIRSLYKQKVESKR 470
            |:.:.:.::|.      :|.::|:   |..|               ..|....|.          
Mouse   741 TANLAAVMVGD------KTFEELSGIHDPKL---------------HHPSQGFRF---------- 774

  Fly   471 DPNSVWLSPEEGVIRVRDQPGFVYTSEASF--MYHFVEKHYLPRE-------ISD---LNEIILR 523
              .:||.|..|..|:            |||  |:..:.:|..|..       .||   ||..|:.
Mouse   775 --GTVWESSAEAYIK------------ASFPEMHAHMRRHSAPTTPHGVAMLTSDPPKLNAFIMD 825

  Fly   524 PESAVYGMVHLNSTYRQLLTQLQVRMLETG-----------------ITSKQSRFFSKTK----- 566
            .....|          ::......::|..|                 :||..|.|.|:.|     
Mouse   826 KSLLDY----------EVSIDADCKLLTVGKPFAIEGYGIGLPQNSPLTSNLSEFISRYKSSGFI 880

  Fly   567 --LH------------TFSNSFVIQVGMEYAAPLFISLLVAYFLALL 599
              ||            .|:.:..:|:|:.:.:.||:.|.:....|||
Mouse   881 DLLHDKWYKMVPCGKRVFAVTETLQMGVYHLSGLFVLLCLGLGSALL 927

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ir75cNP_649013.3 Lig_chan 328..553 CDD:306551 48/251 (19%)
Grin3bXP_006513350.1 PBP1_iGluR_NMDA_NR3 141..481 CDD:380600
PBP2_iGluR_NMDA_Nr3 494..888 CDD:270438 77/396 (19%)
Lig_chan 656..922 CDD:365843 63/328 (19%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C167846357
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG1052
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.830

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