DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Ir75c and Grik5

DIOPT Version :9

Sequence 1:NP_649013.3 Gene:Ir75c / 39983 FlyBaseID:FBgn0261401 Length:623 Species:Drosophila melanogaster
Sequence 2:XP_030098003.1 Gene:Grik5 / 14809 MGIID:95818 Length:1003 Species:Mus musculus


Alignment Length:476 Identity:103/476 - (21%)
Similarity:180/476 - (37%) Gaps:109/476 - (22%)


- Green bases have known domain annotations that are detailed below.


  Fly   200 LAALVSVLPINSSE---------EELLEFLNSDRDSHMDSISRIGNR--------LIMHTQEILG 247
            ||...:.|.||.|:         ..:||.....|..:..::|  ||.        ::....|:|.
Mouse   420 LAMNATTLDINLSQTLANKTLVVTTILENPYVMRRPNFQALS--GNERFEGFCVDMLRELAELLR 482

  Fly   248 F--KLHYIWCGTWSVQDAFG---GAIGMLTN-ESAELCTTPFVPSWNRLHYLHPMTEQAQFRAVC 306
            |  :|..:..|.:...:..|   |.:|.|.| :.|:|....|             |..|:...|.
Mouse   483 FRYRLRLVEDGLYGAPEPNGSWTGMVGELINRQKADLAVAAF-------------TITAEREKVI 534

  Fly   307 MFRTPH-----------NAGIKAAV--FLEPFMPSVWFAFAGLLIFAGVLLWMIFHLERH-WM-- 355
            .|..|.           :.|.|...  ||:||.|:||.......:....:|::...|..: |.  
Mouse   535 DFSKPFMTLGISILYRVHMGRKPGYFSFLDPFSPAVWLFMLLAYLAVSCVLFLAARLSPYEWYNP 599

  Fly   356 QRCLDFIPSLL-------SSCLISFGAACIQGSYLMPKSAGGRL------AFIAVMLTSFLMYNY 407
            ..||...|.:|       :|.....|....|||.:||::...|.      ||..::::|      
Mouse   600 HPCLRARPHILENQYTLGNSLWFPVGGFMQQGSEIMPRALSTRCVSGVWWAFTLIIISS------ 658

  Fly   408 YTSIVVSTLLGSPVRSNIRTIQQLAD-SSLDVGFDTVPFTKTYLVSSPRPDIRSLYKQKVESKRD 471
            ||:.:.:.|....:...:.:...||| ::::.|......|.|:..:|.....:.::.. ::||: 
Mouse   659 YTANLAAFLTVQRMEVPVESADDLADQTNIEYGTIHAGSTMTFFQNSRYQTYQRMWNY-MQSKQ- 721

  Fly   472 PNSVWLSPEEGVIRVRDQPGFVYTSEASFMYHFVEKHYLPREISDLNEIILRPESAVYGM-VHLN 535
            |:....|.|||:.|       |..|..:|:.......|..|...:|.:|....::..||: :.|.
Mouse   722 PSVFVKSTEEGIAR-------VLNSRYAFLLESTMNEYHRRLNCNLTQIGGLLDTKGYGIGMPLG 779

  Fly   536 STYRQLLT----QLQV---------RMLETGITSKQSRFFSKTKLHTFSNSFVIQVGMEYAAPLF 587
            |.:|..:|    |||.         :..|.|...|:....:|            .:|||....:|
Mouse   780 SPFRDEITLAILQLQENNRLEILKRKWWEGGRCPKEEDHRAK------------GLGMENIGGIF 832

  Fly   588 ISLLVAYFLALLILILEICWA 608
            :.|:....:|:.:.::|..|:
Mouse   833 VVLICGLIIAVFVAVMEFIWS 853

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ir75cNP_649013.3 Lig_chan 328..553 CDD:306551 55/255 (22%)
Grik5XP_030098003.1 PBP1_iGluR_Kainate_KA1_2 23..424 CDD:380616 2/3 (67%)
Periplasmic_Binding_Protein_Type_2 437..808 CDD:419667 85/400 (21%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C167846369
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG1052
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
32.740

Return to query results.
Submit another query.