DRSC/TRiP Functional Genomics Resources

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Protein Alignment Ir75c and Grik1

DIOPT Version :9

Sequence 1:NP_649013.3 Gene:Ir75c / 39983 FlyBaseID:FBgn0261401 Length:623 Species:Drosophila melanogaster
Sequence 2:XP_006522977.1 Gene:Grik1 / 14805 MGIID:95814 Length:949 Species:Mus musculus


Alignment Length:711 Identity:138/711 - (19%)
Similarity:250/711 - (35%) Gaps:210/711 - (29%)


- Green bases have known domain annotations that are detailed below.


  Fly     6 LYRLIVFNLLEINLSNL------MVFHCWSIK--EAFPLVEMLNQNGIFSQYIDVQNPDNLANVH 62
            |||....|:....|.|:      .:...||::  :|.|..|....:|:.:               
Mouse   269 LYRYSGVNMTGFRLLNIDNPHVSSIIEKWSMERLQAPPRPETGLLDGVMT--------------- 318

  Fly    63 KEYLDSDLVRLGVFLDLGCDKAELVTNQSSRARLYNQNLH----WLLYDEAGNFTK------LT- 116
               .::.|:...|::      ..:.::::|:..:.:...|    |.|.....|..|      || 
Mouse   319 ---TEAALMYDAVYM------VAIASHRASQLTVSSLQCHRHKPWRLGPRFMNLIKEARWDGLTG 374

  Fly   117 ----QLFEGANLSLNADVTYVSREDEERFI------LHDVYNK----GSHLGGKLNITVDQTLQC 167
                ...:|.....:.|:..:..|..|:..      |:.|:.|    .|:.|  ||:|...    
Mouse   375 RITFNKTDGLRKDFDLDIISLKEEGTEKASGEVSKHLYKVWKKIGIWNSNSG--LNMTDGN---- 433

  Fly   168 NRSHCQVKEYLSELHLRPRLQHRMDLSSVTFRLAALVSVLPINSSEEELLEFLNSDRDSH----- 227
                            |.|..:..|  |:..|...:.::|     ||..:.:..||:..:     
Mouse   434 ----------------RDRSNNITD--SLANRTLIVTTIL-----EEPYVMYRKSDKPLYGNDRF 475

  Fly   228 ----MDSISRIGNRLIMHTQEILGF--KLHYIWCGTWSVQDAFG---GAIGMLTNESAELCTTPF 283
                :|.:..:.|        ||||  .:..:..|.:..|:..|   |.:..|.:..|:|...|.
Mouse   476 EGYCLDLLKELSN--------ILGFLYDVKLVPDGKYGAQNDKGEWNGMVKELIDHRADLAVAPL 532

  Fly   284 VPSWNR---LHYLHP-MTEQAQFRAVCMFRTPHNAGIKAAVFLEPFMPSVWFAFAGLLIFAGVLL 344
            ..::.|   :.:..| ||    .....::|.|:........||.|..|.:|...  ||...||..
Mouse   533 TITYVREKVIDFSKPFMT----LGISILYRKPNGTNPGVFSFLNPLSPDIWMYV--LLACLGVSC 591

  Fly   345 WMIFHLERHWMQRCLDFIP--------------------SLLSSCLISFGAACIQGSYLMPKSAG 389
             ::|.:.|        |.|                    :||:|.....||...|||.||||:..
Mouse   592 -VLFVIAR--------FTPYEWYNPHPCNPDSDVVENNFTLLNSFWFGVGALMQQGSELMPKALS 647

  Fly   390 GRLA------FIAVMLTSFLMYNYYTSIVVSTLLGSPVRSNIRTIQQLA-DSSLDVGF----DTV 443
            .|:.      |..::::|      ||:.:.:.|....:.|.|.:...|| .:.::.|.    .|:
Mouse   648 TRIVGGIWWFFTLIIISS------YTANLAAFLTVERMESPIDSADDLAKQTKIEYGAVRDGSTM 706

  Fly   444 PFTKTYLVSSPRPDIRSLYKQ--KVESKRDPNSVWLSPEEGVIRVRDQPGFVYTSEASFMYHFVE 506
            .|.|...:|:        |::  ...|.|..:::..:.:||:.|       |.|::.:.:.....
Mouse   707 TFFKKSKIST--------YEKMWAFMSSRQQSALVKNSDEGIQR-------VLTTDYALLMESTS 756

  Fly   507 KHYLPREISDLNEIILRPESAVYGM-VHLNSTYRQLLTQLQVRMLETGITSKQSRFFSKTKLHTF 570
            ..|:.:...:|.:|....:|..||: ..:.|.||..:|...:::.|.|            |||..
Mouse   757 IEYVTQRNCNLTQIGGLIDSKGYGVGTPIGSPYRDKITIAILQLQEEG------------KLHMM 809

  Fly   571 SNSF-------------VIQVGMEYAAPLFISLLVAYFLALLILILEICWARYAKKKFSTI 618
            ...:             ...:|:|....:||.|.....|::.:.|.|..   |..:|.:.|
Mouse   810 KEKWWRGNGCPEEDSKEASALGVENIGGIFIVLAAGLVLSVFVAIGEFI---YKSRKNNDI 867

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ir75cNP_649013.3 Lig_chan 328..553 CDD:306551 55/258 (21%)
Grik1XP_006522977.1 PBP1_iGluR_Kainate 38..431 CDD:380605 33/187 (18%)
Periplasmic_Binding_Protein_Type_2 446..815 CDD:389745 89/429 (21%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C167846345
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG1052
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
32.740

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