DRSC/TRiP Functional Genomics Resources

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Protein Alignment Ir75c and Grik4

DIOPT Version :10

Sequence 1:NP_649013.3 Gene:Ir75c / 39983 FlyBaseID:FBgn0261401 Length:623 Species:Drosophila melanogaster
Sequence 2:NP_780690.2 Gene:Grik4 / 110637 MGIID:95817 Length:956 Species:Mus musculus


Alignment Length:698 Identity:134/698 - (19%)
Similarity:239/698 - (34%) Gaps:205/698 - (29%)


- Green bases have known domain annotations that are detailed below.


  Fly     7 YRLIVFNLLEINLS----------NLMVFHCWSIKEAF--PLVEMLNQ----------------- 42
            |...:|..||.:|.          |::.|..::...||  ...:.|||                 
Mouse   240 YYTYIFTNLEFSLQRMDSLVDDRVNILGFSIFNQSHAFFQEFSQSLNQSWQENCDHVPFTGPALS 304

  Fly    43 -----NGIFSQYIDVQNPDNLANVHKEYLDSDLVRLGVFLDLGCDKAELVTNQSSRARLYNQNLH 102
                 :.:::....||.    .|..:|        :|| ..|.|..|::                
Mouse   305 SALLFDAVYAVVTAVQE----LNRSQE--------IGV-KPLSCGSAQI---------------- 340

  Fly   103 WLLYDEAGNFTKLTQLFEGANLSLNADVTYVSREDEERFILHDVYNKGSHLGGKLNITVDQTLQC 167
            |.......|:.::.:| ||    |...:.:.|:.....:.|                   :.||.
Mouse   341 WQHGTSLMNYLRMVEL-EG----LTGHIEFNSKGQRSNYAL-------------------KILQF 381

  Fly   168 NRSHCQ------VKEYLSELHLRPRLQHRMDLSSVTFRLAALVSV------LPINSSEEELLEFL 220
            .|:..|      |.|.||   :..|| :..::|...|....:|:.      |.:..:.:|:   .
Mouse   382 TRNGFQQIGQWHVAEGLS---MDSRL-YASNISDSLFNTTLVVTTILENPYLMLKGNHQEM---E 439

  Fly   221 NSDRDSH--MDSISRIGNRLIMHTQEILGF--KLHYIWCGTWSVQDAFG---GAIGMLTNESAEL 278
            .:||...  :|.:..:.        |||.|  |:..:..|.:.|.:|.|   |.:|.|....|:|
Mouse   440 GNDRYEGFCVDMLKELA--------EILRFNYKIRLVGDGVYGVPEANGTWTGMVGELIARKADL 496

  Fly   279 CTTPFVPSWNRLHYLHPMTEQAQFRAVCMFRTPH-NAGIKAAV------------FLEPFMPSVW 330
            ...             .:|..|:...|..|..|. ..||....            ||:||.|.||
Mouse   497 AVA-------------GLTITAEREKVIDFSKPFMTLGISILYRVHMGRRPGYFSFLDPFSPGVW 548

  Fly   331 FAFAGLLIFAGVLLWMIFHLERH-WMQ-------RCLDFIP--SLLSSCLISFGAACIQGSYLMP 385
            .......:....:|:::..|..: |..       ||...:.  ||.:|.....|....|||.:.|
Mouse   549 LFMLLAYLAVSCVLFLVARLTPYEWYSPHPCAQGRCNLLVNQYSLGNSLWFPVGGFMQQGSTIAP 613

  Fly   386 KSAGGRL------AFIAVMLTSFLMYNYYTSIVVSTLLGSPVRSNIRTIQQLAD-SSLDVGFDTV 443
            ::...|.      ||..::::|      ||:.:.:.|....:...|.::..||| ::::.|....
Mouse   614 RALSTRCVSGVWWAFTLIIISS------YTANLAAFLTVQRMEVPIESVDDLADQTAIEYGTIHG 672

  Fly   444 PFTKTYLVSSPRPDIRSLYKQKVESKRDPNSVWLSPEEGVIRVRDQPGFVYTSEASFMYHFVEKH 508
            ..:.|:..:|.....:.::....  .:.|:....|.|||:.|       |..|..:|:.......
Mouse   673 GSSMTFFQNSRYQTYQRMWNYMY--SKQPSVFVKSTEEGIAR-------VLNSNYAFLLESTMNE 728

  Fly   509 YLPREISDLNEIILRPESAVYGM-VHLNSTYRQ----LLTQLQV---------RMLETGITSKQS 559
            |..:...:|.:|....::..||: :.:.|.:|.    .:.|||.         :..|.|...|:.
Mouse   729 YYRQRNCNLTQIGGLLDTKGYGIGMPVGSVFRDEFDLAILQLQENNRLEILKRKWWEGGKCPKEE 793

  Fly   560 RFFSKTKLHTFSNSFVIQVGMEYAAPLFISLLVAYFLALLILILEICW 607
            ...:|            .:|||....:|:.|:....:|:.:.:||..|
Mouse   794 DHRAK------------GLGMENIGGIFVVLICGLIVAIFMAMLEFLW 829

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ir75cNP_649013.3 Lig_chan 328..>508 CDD:459656 38/196 (19%)
Grik4NP_780690.2 Periplasmic_Binding_Protein_type1 24..402 CDD:471960 37/217 (17%)
PBP2_iGluR_kainate_KA1 415..785 CDD:270442 80/408 (20%)
QRL_CxxC_CxxC 863..927 CDD:469521
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 931..956
Blue background indicates that the domain is not in the aligned region.

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