DRSC/TRiP Functional Genomics Resources

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Protein Alignment Ir75c and grin3b

DIOPT Version :10

Sequence 1:NP_649013.3 Gene:Ir75c / 39983 FlyBaseID:FBgn0261401 Length:623 Species:Drosophila melanogaster
Sequence 2:XP_017952374.2 Gene:grin3b / 100497172 XenbaseID:XB-GENE-990106 Length:1005 Species:Xenopus tropicalis


Alignment Length:412 Identity:84/412 - (20%)
Similarity:146/412 - (35%) Gaps:109/412 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly   248 FKLHYIWCGTWSVQ--DAFGGAIGMLTNESAELCTTPFVPSWNR---LHYLHPMTEQAQFRAVCM 307
            |:|:.:..|.:..:  |.:.|.:|.|.:.:|.:..|.|..:..|   :.:..|....:....|.|
 Frog   501 FELYIVGDGKYGARKGDRWTGLVGDLLSGAAHMAVTSFSINSARSTVIDFTSPFYSTSLGILVRM 565

  Fly   308 FRTPHNAGIKAAVFLEPFMPSVWFA-FAGLLIFAGVLLWMIFH-------LERHWMQRCLDF-IP 363
            ..|....|    .|:.|...|:|.. |..|.|.|   |::.|:       :..|...|...| ..
 Frog   566 RDTASPIG----AFMWPLHWSMWVGIFVALHITA---LFLTFYEWKSPFGMTPHGRNRTKIFSYS 623

  Fly   364 SLLSSC-LISFGAACIQGSYLMPKSAGGRLAFIAVMLTSFLMYNYYTSIVVSTLLGSPVRSNIRT 427
            |.|:.| .|.||...   |...||...||:......:...|:.:.||:.:.:.::|         
 Frog   624 SALNLCYAILFGRTV---SSKTPKCCTGRVLMNLWAIFCLLVLSSYTANLAAVMVG--------- 676

  Fly   428 IQQLADSSLDVGFDTVPFTKTYLVSSPRPDIRSLYKQKVESKRDPNSVWLSPEEGVIRVRDQPGF 492
                     |..|:.:.......:..|....|.            .:||.|..|..|:       
 Frog   677 ---------DKTFEALSGIHDPKLHHPSQGFRF------------GTVWESSAEQYIK------- 713

  Fly   493 VYTSEASF--MYHFVEK----------HYLPREISDLNEIILRPESAVYGMVHLNSTYRQLLTQL 545
                 .||  |::::.|          |.|..:...||..|:......| .|.::|..: |||..
 Frog   714 -----KSFPEMHNYMRKFSVPATSDGVHLLKTDPPTLNAFIMDKALLDY-EVSIDSDCK-LLTIG 771

  Fly   546 QVRMLE---------TGITSKQSRFFSKTKLHTFSNSF-------------------VIQVGMEY 582
            :...:|         :.:||..|.|.|:.|...|.::.                   .:|:|:.:
 Frog   772 KPFAIEGYGIGLPQNSPLTSNISEFISRYKSSGFMDTLHDKWYKMVPCGKRVYAVTETLQMGIYH 836

  Fly   583 AAPLFISLLVAYFLALLILILE 604
            .:.||:.|.:.:..:||..::|
 Frog   837 FSGLFVLLCIGFCGSLLTSLME 858

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ir75cNP_649013.3 Lig_chan 328..>508 CDD:459656 39/201 (19%)
grin3bXP_017952374.2 PBP1_iGluR_NMDA_NR3 29..402 CDD:380600
PBP2_iGluR_NMDA_Nr3 418..814 CDD:270438 76/366 (21%)
Lig_chan 580..847 CDD:459656 63/316 (20%)
Blue background indicates that the domain is not in the aligned region.

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