DRSC/TRiP Functional Genomics Resources

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Protein Alignment Ir75c and grik1

DIOPT Version :10

Sequence 1:NP_649013.3 Gene:Ir75c / 39983 FlyBaseID:FBgn0261401 Length:623 Species:Drosophila melanogaster
Sequence 2:XP_004912220.1 Gene:grik1 / 100493949 XenbaseID:XB-GENE-957124 Length:928 Species:Xenopus tropicalis


Alignment Length:489 Identity:102/489 - (20%)
Similarity:181/489 - (37%) Gaps:129/489 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly   195 SVTFRLAALVSVLPINSSEEELLEFLNSDRDSH---------MDSISRIGNRLIMHTQEILGF-- 248
            |:..|...:.::|     |:..:.|..||:..:         :|.:..:.|        ||||  
 Frog   451 SLANRTLIVTTIL-----EDPYVMFRKSDKPLYGNDRFEGYCLDLLKELSN--------ILGFTY 502

  Fly   249 KLHYIWCGTWSVQDAFG---GAIGMLTNESAELCTTPFVPSWNR---LHYLHP-MTEQAQFRAVC 306
            ::..:..|.:..|:..|   |.:..|.:..|:|...|...::.|   :.:..| ||    .....
 Frog   503 EVRLVVDGKYGAQNDKGEWNGMVRELIDHKADLAVAPLTITYVREKVIDFSKPFMT----LGISI 563

  Fly   307 MFRTPHNAGIKAAVFLEPFMPSVWFAFAGLLIFAGVLLWMIFHLERHWMQRCLDFIP-------- 363
            ::|.|:........||.|..|.:|...  ||...||.. ::|.:.|        |.|        
 Frog   564 LYRKPNGTNPGVFSFLNPLSPDIWMYV--LLACLGVSC-VLFVIAR--------FTPYEWYNPHP 617

  Fly   364 ------------SLLSSCLISFGAACIQGSYLMPKSAGGRLA------FIAVMLTSFLMYNYYTS 410
                        :||:|.....||...|||.||||:...|:.      |..::::|      ||:
 Frog   618 CNPDSDVVENNFTLLNSFWFGVGALMQQGSELMPKALSTRIVGGIWWFFTLIIISS------YTA 676

  Fly   411 IVVSTLLGSPVRSNIRTIQQLA-DSSLDVGF----DTVPFTKTYLVSSPRPDIRSLYKQ--KVES 468
            .:.:.|....:.|.|.:...|| .:.::.|.    .|:.|.|...:|:        |::  ...|
 Frog   677 NLAAFLTVERMESPIDSADDLAKQTKIEYGAVRDGSTMTFFKKSKIST--------YEKMWAFMS 733

  Fly   469 KRDPNSVWLSPEEGVIRVRDQPGFVYTSEASFMYHFVEKHYLPREISDLNEIILRPESAVYGM-V 532
            .|...::..:.:||:.|       |.|::.:.:.......|:.:...:|.:|....:|..||: .
 Frog   734 SRQQTALVKNNDEGIQR-------VLTTDYALLMESTSIEYVTQRNCNLTQIGGLIDSKGYGVGT 791

  Fly   533 HLNSTYRQLLTQLQVRMLETGITSKQSRFFSKTKLHTFSNSF-------------VIQVGMEYAA 584
            .:.|.||..:|...:::.|.|            |||.....:             ...:|:|...
 Frog   792 PIGSPYRDKITIAILQLQEEG------------KLHMMKEKWWRGNGCPEEDSKEASALGVENIG 844

  Fly   585 PLFISLLVAYFLALLILILEICWARYAKKKFSTI 618
            .:||.|.....|::.:.|.|..   |..:|.|.|
 Frog   845 GIFIVLAAGLVLSVFVAIGEFI---YKSRKNSDI 875

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ir75cNP_649013.3 Lig_chan 328..>508 CDD:459656 44/212 (21%)
grik1XP_004912220.1 PBP1_iGluR_Kainate 46..439 CDD:380605
Periplasmic_Binding_Protein_Type_2 454..823 CDD:473866 89/429 (21%)
Blue background indicates that the domain is not in the aligned region.

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