DRSC/TRiP Functional Genomics Resources

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Protein Alignment Ir75c and grin2b

DIOPT Version :9

Sequence 1:NP_649013.3 Gene:Ir75c / 39983 FlyBaseID:FBgn0261401 Length:623 Species:Drosophila melanogaster
Sequence 2:XP_017948700.2 Gene:grin2b / 100490580 XenbaseID:XB-GENE-949327 Length:1449 Species:Xenopus tropicalis


Alignment Length:754 Identity:147/754 - (19%)
Similarity:248/754 - (32%) Gaps:262/754 - (34%)


- Green bases have known domain annotations that are detailed below.


  Fly     4 WPLYRLI------------VFNLLEINLSNLMVFHCWSIKEAFPLVEMLNQNGIF---------- 46
            |.|..:|            :.|.|:...|.:::.:| :.:||..:.|:.:..|:.          
 Frog   192 WELEEVIHLDMSLDDNDSKIQNQLKKLQSPVILLYC-TKEEATYIFEVAHSVGLTGYGYTWIVPS 255

  Fly    47 -----SQYIDVQNPDNLANVHKEYLDSDL---VRLGVFLDLGCDKAELVTNQS-----------S 92
                 :..:..:.|..|.:|..:..|.||   ||.|:.:........|..:.|           .
 Frog   256 LVAGDTDTVPAEFPTGLISVSYDEWDYDLPARVRDGIAIITTAASTMLSEHNSIPQSKSSCYNIQ 320

  Fly    93 RARLYNQNL--HWLLYDEAGNFTKLTQLFEGANLSLNADVTYVSREDEERFILHDVYNKGSHLGG 155
            .:|:|..::  .:|:     |.|     |||.|||.:.|                    |..:..
 Frog   321 ESRVYEAHMLKRYLI-----NVT-----FEGRNLSFSED--------------------GYQMHP 355

  Fly   156 KLNITVDQTLQCNRSHCQVKEYLSE-----------LHLRPRLQHRMD--LSSVTFRLAALVSVL 207
            ||.|.:   |...|...:|.:|...           ..|.|..:...|  ||.||...|..|.|.
 Frog   356 KLVIIL---LNQQRKWERVGKYKDRSLKMKYYVWPVFELYPNSEEHKDEHLSIVTLEEAPFVIVE 417

  Fly   208 PI---------------------NSSEEELLEFLNSDRDSHMDSISRIGNRLIMHTQEIL----- 246
            .:                     |.:||.........:...:|.:.:|. :.:..|.::.     
 Frog   418 DVDPLSGTCMRNTVPCRKQIRTENRTEEGGNYIKRCCKGFCIDILKKIA-KTVKFTYDLYLVTNG 481

  Fly   247 --GFKLHYIWCGTWS------VQDAFGGAIGMLT--NESAELC--TTPFVPSWNRLHYLHPMTEQ 299
              |.|::    |||:      |......|:|.||  .|.:|:.  :.||:.:             
 Frog   482 KHGKKIN----GTWNGMIGEVVTKRAYMAVGSLTINEERSEVVDFSVPFIET------------- 529

  Fly   300 AQFRAVCMFRTPHNAGIKAAVFLEPFMPSVW-FAFAGLLIFAGVLLWMIFHLERHWMQRCL---- 359
                .:.:..:..|..:..:.|||||...|| ..|..|||.:.|.:::..:.......|||    
 Frog   530 ----GISVMVSRSNGTVSPSAFLEPFSADVWVMMFVMLLIVSAVAVFVFEYFSPVGYNRCLADGR 590

  Fly   360 -DFIPSL-------LSSCLISFGAACIQGSYLMPKSAGGRL-----AFIAVM--------LTSFL 403
             ...||.       |...|:...:..:|.    ||....::     ||.||:        |.:|:
 Frog   591 EPGGPSFTIGKAIWLLWGLVFNNSVPVQN----PKGTTSKIMVSVWAFFAVIFLASYTANLAAFM 651

  Fly   404 MYNYYTSIVVSTLLGSPVRSNIRTIQQLADSSLDVGFDTVPFTKTYLVSSPRPDIRSLYKQKVE- 467
            :...|.. .||.|       :.:..|:..|.|....|.|||      ..|...:||:.|.:... 
 Frog   652 IQEEYVD-QVSGL-------SDKKFQRPNDFSPAFRFGTVP------NGSTERNIRNNYLEMHSY 702

  Fly   468 ----SKRDPNSVWLSPEEGVIRVRDQPGFVYTSEASFMYHFVEKHYLPREISDLNEIILRPE--- 525
                ::|......||.:.|.:     ..|:|                  :.:.||.:..|.|   
 Frog   703 MVKFNQRSVQDALLSLKTGKL-----DAFIY------------------DAAVLNYMAGRDEGCK 744

  Fly   526 -----------SAVYGM-VHLNSTYR--------QLLTQLQVRMLE----TGITSKQSRFFSKTK 566
                       :..||: :..:|.::        ||....::..||    |||            
 Frog   745 LVTIGSGKVFATTGYGIAIQKDSGWKRQVDLAILQLFGDGEMEELEALWLTGI------------ 797

  Fly   567 LHTFSNSFV-IQVGMEYAAPLFISLLVAYFLALLILILE 604
            .|...|..: .|:.::..|.:|..|..|..|:|:..|:|
 Frog   798 CHNEKNEVMSSQLDIDNMAGVFYMLAAAMALSLITFIME 836

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ir75cNP_649013.3 Lig_chan 328..553 CDD:306551 55/282 (20%)
grin2bXP_017948700.2 PBP1_iGluR_NMDA_NR2 28..383 CDD:380601 42/224 (19%)
PBP2_iGluR_NMDA_Nr2 400..800 CDD:270436 92/474 (19%)
NMDAR2_C 837..1449 CDD:402274 147/754 (19%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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