DRSC/TRiP Functional Genomics Resources

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Protein Alignment Ir75c and grin2cb

DIOPT Version :9

Sequence 1:NP_649013.3 Gene:Ir75c / 39983 FlyBaseID:FBgn0261401 Length:623 Species:Drosophila melanogaster
Sequence 2:XP_009305071.2 Gene:grin2cb / 100333648 ZFINID:ZDB-GENE-100308-2 Length:1328 Species:Danio rerio


Alignment Length:642 Identity:120/642 - (18%)
Similarity:212/642 - (33%) Gaps:220/642 - (34%)


- Green bases have known domain annotations that are detailed below.


  Fly    63 KEYLDSDLVR--LGV---FLDLGCDKAELVTNQSSRARLYNQNLHWLLYDEAGNFTKLTQLFEGA 122
            |.|.::.|.|  |.|   ..||..:....:||.|......::..||   |:.|:       :||.
Zfish   331 KSYANNSLFRHMLNVSWEHKDLSFNSDGYLTNPSMVIIALDRENHW---DKVGS-------YEGG 385

  Fly   123 NLSL-----------------NADVTYVSREDEERFILHDVYNKGSHLGGKLNITVDQTLQCNRS 170
            .|.:                 |..:| |:..:|..|::.:..:..:      ...|..|:.|.|.
Zfish   386 ILQMRYPVWPRYGSFLEPVSDNRHLT-VATLEERPFVIVESVDPAT------GTCVRNTVPCRRQ 443

  Fly   171 HCQVKEYLSELHLRPRLQHRMDLSSVTFRLAALVSVLPINSSEEELLEFLNSDRDSHMDSISRIG 235
            ..:.:..:.  |..|..:    |....|.:..|          ::|...:....|.::.:..:  
Zfish   444 SNRTESIIG--HTEPYTK----LCCKGFCIDIL----------KKLSRTIKFSYDLYLVTNGK-- 490

  Fly   236 NRLIMHTQEILGFKLHYIWCGTWSVQDAF----GGAIGMLT--NESAELC--TTPFVPSWNRLHY 292
                 |.:.:.|     :|.|  .:.:.|    ..|||.||  .|.:|:.  :.|||.:      
Zfish   491 -----HGKMVRG-----VWNG--MIGEVFYKRADMAIGSLTINEERSEIVDFSVPFVET------ 537

  Fly   293 LHPMTEQAQFRAVCMFRTPHNAGIKAAVFLEPFMPSVW-FAFAGLLIFAGVLLWMIFHLERHWMQ 356
                       .:.:.....|..:..:.||||:.|:|| ..|...|....|.:::..:       
Zfish   538 -----------GISVMVARSNGTVSPSAFLEPYSPAVWVMMFVMCLTVVAVTVFVFEY------- 584

  Fly   357 RCLDFIPSLLSSCLISFGA------ACIQGSYLM-------------PKSAGGRL-----AFIAV 397
                |.|...:..|:|..|      ...:..:|:             ||....::     ||.||
Zfish   585 ----FSPVGYNRSLVSAKAPGGPTFTIGKSVWLLWGIVFNNSVPIENPKGTTSKIMVLVWAFFAV 645

  Fly   398 M--------LTSFLMYNYYTSIVVSTLLGSPVRSNIRTIQQLADSSLD--------VGFDTVPFT 446
            :        |.:|::...|                |.|:..|:|....        ..|.|||..
Zfish   646 IFLASYTANLAAFMIQEQY----------------IDTVSGLSDKKFQKPQEHYPPFRFGTVPNG 694

  Fly   447 KTYL-VSSPRPDIRS---LYKQKVESKRDPNSVWLSPEEGV--IRVRDQPGFVYTSEASFMYHFV 505
            .|.. :.|..||:.:   .|.||            ..||.:  ::......|:|  :|:.:.:..
Zfish   695 STERNIRSNYPDMHTHMIKYNQK------------GVEEALNSLKTGKLDAFIY--DAAVLNYMA 745

  Fly   506 EKHYLPREISDLNEIILRPESAV-----YGM-VHLNSTYR--------QLLTQLQVRMLET---- 552
            .|       .:..:::......|     ||: :..:|.::        |.|.....:.|||    
Zfish   746 GK-------DEGCKLVTIGSGKVFATTGYGIALQKDSRWKRPIDLALLQFLGDGDTQRLETVWLS 803

  Fly   553 GITSKQSRFFSKTKLHTFSNSFVIQVGMEYAAPLFISLLVAYFLALLILILE--ICW 607
            ||...:......:||           .::..|.:|..||||..|:||:...|  :.|
Zfish   804 GICQNEKNEVMSSKL-----------DIDNMAGVFYMLLVAMGLSLLVFAWEHLLYW 849

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ir75cNP_649013.3 Lig_chan 328..553 CDD:306551 50/289 (17%)
grin2cbXP_009305071.2 PBP1_iGluR_NMDA_NR2 37..396 CDD:107373 18/74 (24%)
PBP2_iGluR_NMDA_Nr2 407..808 CDD:270436 89/502 (18%)
NMDAR2_C 845..>932 CDD:313729 1/5 (20%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C170591238
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG1052
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
21.830

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