DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Ir75c and grin3bb

DIOPT Version :9

Sequence 1:NP_649013.3 Gene:Ir75c / 39983 FlyBaseID:FBgn0261401 Length:623 Species:Drosophila melanogaster
Sequence 2:XP_017213803.2 Gene:grin3bb / 100333101 ZFINID:ZDB-GENE-131122-77 Length:1114 Species:Danio rerio


Alignment Length:575 Identity:117/575 - (20%)
Similarity:187/575 - (32%) Gaps:168/575 - (29%)


- Green bases have known domain annotations that are detailed below.


  Fly    92 SRARLYNQNLHWLLY----DEAGNFTKLTQLFE-GANLSLNADVTYVSREDEERFILHDVYNKGS 151
            ||.|:.....|..::    ||.||........: |.|.|...|..|..|....:..|...|:|  
Zfish   456 SRLRVVTLVEHPFVFTREVDEDGNCPAGQYCLDAGTNSSETLDHLYAERAQGNKSFLPPDYSK-- 518

  Fly   152 HLGGKLNITVDQTLQCNRSHCQVKEYLSELHLRPRLQHRMDLSSVTFRLAALVSVLPINSSEEEL 216
                           |...:|                  :||.                   |:|
Zfish   519 ---------------CCYGYC------------------IDLL-------------------EKL 531

  Fly   217 LEFLNSDRDSHMDSISRIGNRLIMHTQEILGFKLHYIWCGTWSVQDAFGGAIGMLTNESAELCTT 281
            .|.:|.:.|.::....:.|        .:.|        |.|:      |.:|.|.:..|::..|
Zfish   532 SEDMNFEFDLYIVGDGKYG--------AVKG--------GQWT------GLVGDLLSGVADMAVT 574

  Fly   282 PFVPSWNR---LHYLHPMTEQAQFRAVCMFRTPHNAGIKAAVFLEPFMPSVWFA-FAGL---LIF 339
            .|..:..|   :.:..|....:   ...:.|:...|. ....|:.|...|:|.. |..|   .:|
Zfish   575 SFSINSARSKVIDFTSPFFSTS---LGILVRSKDTAA-PIGAFMWPLHWSMWMGIFVALHITALF 635

  Fly   340 AGVLLWMI-FHLERHWMQRCLDF-IPSLLSSC-LISFGAACIQGSYLMPKSAGGRLAFIAVMLTS 401
            ..:..|.. |.:..|...|...| ..|.|:.| .|.||...   |...||...||.......:..
Zfish   636 LTLYEWKSPFGMTPHGRNRVKVFSYSSALNLCYAILFGRTV---SSKTPKCWTGRFLMNLWAIFC 697

  Fly   402 FLMYNYYTSIVVSTLLGSPVRSNIRTIQ--QLADSSLDVGFDTV--PFTKTYLVSSPRPDIRSLY 462
            .|:.:.||:.:.:.::|......:..|.  :|...|....|.||  ...:.|:..| .|::.. |
Zfish   698 LLVLSSYTANLAAVMVGEKTFEEVSGIHDAKLHHPSQGFRFGTVRESSAEDYMKKS-FPEMHE-Y 760

  Fly   463 KQKVESKRDPNSVWLSPEEGVIRVRDQP----GFVYTSEASFMYHFVEKHYLPREIS---DLNEI 520
            .:|......|        :||..::..|    .|:           ::|..|..|:|   |...:
Zfish   761 MRKFNEPTTP--------DGVATLKTDPPQLDAFI-----------MDKALLDYEVSIDADCKLL 806

  Fly   521 ILRPESAVYGMVHLNSTYRQLLTQLQVRMLETGITSKQSRFFSKTK-------LH---------- 568
            .:....|:.|       |...|.|      .:.:||..|.|.|:.|       ||          
Zfish   807 TVGKPFAIEG-------YGIGLPQ------NSPLTSNISEFVSRYKSDGYMDMLHDKWYKVVPCG 858

  Fly   569 --TFSNSFVIQVGMEYAAPLFISLLVAYFLALLILILEICWARYA------KKKF 615
              .|:.:..:|:|:.:.:.||:.|.|....|||.|..|..:.|..      |:||
Zfish   859 KRVFAVTETLQMGIRHFSGLFVLLCVGVTGALLTLAGEHAFYRLVLPHIRRKQKF 913

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ir75cNP_649013.3 Lig_chan 328..553 CDD:306551 51/242 (21%)
grin3bbXP_017213803.2 PBP1_iGluR_NMDA_NR3 29..428 CDD:107372
PBP2_iGluR_NMDA_Nr3 457..852 CDD:270438 100/511 (20%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C170591232
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
21.840

Return to query results.
Submit another query.