DRSC/TRiP Functional Genomics Resources

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Protein Alignment Ir75a and GLR1.3

DIOPT Version :9

Sequence 1:NP_649012.2 Gene:Ir75a / 39982 FlyBaseID:FBgn0036757 Length:629 Species:Drosophila melanogaster
Sequence 2:NP_199652.1 Gene:GLR1.3 / 834896 AraportID:AT5G48410 Length:860 Species:Arabidopsis thaliana


Alignment Length:744 Identity:143/744 - (19%)
Similarity:250/744 - (33%) Gaps:244/744 - (32%)


- Green bases have known domain annotations that are detailed below.


  Fly    15 VQSRIGFIVLFHCWQSDESLKFA--QQ--------FMKPIHPILVYHQFVQMRGVLNWSHLELSY 69
            |||::||.|     .|.|.....  ||        |:..:..::..|.|...|        .|..
plant   204 VQSKVGFTV-----SSSEDFVMGRLQQLKDLGTTVFVVHLSEVIATHLFPCAR--------RLGL 255

  Fly    70 MGH------TQPTLAIYVDIKCDQTQDLLEEASREQIY--------NQHYHW--LLVGNQSKLEF 118
            ||.      |..|:..:.:...|.|:..:|.....:.|        |....|  .|...:::|..
plant   256 MGDGFVWILTAKTMNSFHENIDDFTKQAMEGVVGFKSYIPMSIELQNFTLRWRKSLPVEEAELTR 320

  Fly   119 YDLFGL------FNISIDADV-------SYVKEQI---QDNNDSVAYAVHD---VYNNGKIIGGQ 164
            ..:.|:      |.::..|:|       |.:.|:|   :.|..|..:.::|   :.|..:||   
plant   321 LSISGIWAHDIAFALARAAEVIRMPNVTSTLLEEITKTRFNGLSGDFQLNDKKLLSNKFEII--- 382

  Fly   165 LNVTGSHEMSCDPFVCRRTRHLSSLQKRSKYGNREQLTDVVLRVATVV-----TQRP-------- 216
             |:.||.|           |.:..|.....:.||..|:....::.|::     .|.|        
plant   383 -NMIGSSE-----------RRVGFLNSNGSFSNRRHLSSTHNKLETIIWPGGSAQSPKGTSLIDS 435

  Fly   217 -------LTLSDDELIRFLSQENDTHIDSLARFGFHLTLILRDL--LHCKMKFIFSDSW------ 266
                   |..|.:...|.:..|.|...:.|...||.:.:....:  .:.::::|   .|      
plant   436 DRKKLRVLVTSSNRFPRLMKVETDPVTNELIVEGFCIEVFRASISPFNYEVEYI---PWLNGSNY 497

  Fly   267 --------SKSDVVGGSVGAVVDQTADLTATPSLATEGRLKYLSAIIETGF------FRSVCIFR 317
                    |:.|....:||       |:|.|.:.:|  .:.:.....|.|.      .||:.   
plant   498 DNLAYALHSQKDKYDAAVG-------DITITSNRST--YVDFTLPFTEMGLGIVAVKERSMW--- 550

  Fly   318 TPHNAGLRGDVFLQPFSPLVWYLFGGVLSLIGVLLWITFYMECKRMQKRW--------------- 367
                      ||.||.:|.:|........|.||::|:....|.|..|..|               
plant   551 ----------VFFQPLTPDLWITSAFFFVLTGVIVWLIERAENKEFQGSWPQQIGVVLWFGFSTL 605

  Fly   368 ---RLDYLPSLLSTFLISFGAACIQSSSLIPRSAGGRLIYFALFLISFIMYNY---YTSVVVSSL 426
               ..:.|...||.|:::     :...:::..:|.......::..:..|.:|.   |...:..||
plant   606 VYAHREKLKHNLSRFVVT-----VWVFAVLILTASYTATLTSMMTVQQIRFNSNEDYVGHLSGSL 665

  Fly   427 LSSP--VKSKIKTMRQLAESSL----------TVG--LEPLPFTKSYLNYSRLPEIHLFIKRKIE 477
            :::.  ..|.::.||.|..:|.          ||.  ::.||:.|..|..:   ..|.|:. |.:
plant   666 IANVALTSSSLRAMRSLGLNSAADYAQALLNKTVSFVVDELPYLKVVLGEN---PTHFFMV-KTQ 726

  Fly   478 SQTQNPELWLPAEQGVLRVRDNPGYVYVFETSSGYAYVERYFTAQEIC------DLNEVLFR--P 534
            |.|.                   |:.::|:  .|:..|..  .::||.      .|||:..|  .
plant   727 STTN-------------------GFGFMFQ--KGFELVPN--VSREISKLRTSEKLNEMEKRWFD 768

  Fly   535 EQLFYTHLHRNSTYKELFRLRFLRILETGVYRKQRSYWVHMKLHCVAQNFVITVGMEYVAPLLLM 599
            .||.|| ....|....|:|.|.|.|                         :|.|...:...:|::
plant   769 NQLPYT-TDDTSNPITLYRFRGLFI-------------------------IIGVSFAFALAVLVI 807

  Fly   600 LICADILVVVILLVELAWKRFFTRHLTFH 628
            |...|...:::..::|:.:   .||...|
plant   808 LCLRDKWEILVDNLDLSQR---LRHFRIH 833

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ir75aNP_649012.2 Lig_chan 337..603 CDD:306551 59/308 (19%)
GLR1.3NP_199652.1 PBP1_GABAb_receptor 43..405 CDD:107361 47/228 (21%)
ANF_receptor 57..385 CDD:279440 41/197 (21%)
GluR_Plant 438..767 CDD:270404 72/385 (19%)
Lig_chan 559..798 CDD:278489 57/296 (19%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG1052
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR18966
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
22.000

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