DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Ir75a and GLR1.4

DIOPT Version :9

Sequence 1:NP_649012.2 Gene:Ir75a / 39982 FlyBaseID:FBgn0036757 Length:629 Species:Drosophila melanogaster
Sequence 2:NP_187408.2 Gene:GLR1.4 / 819940 AraportID:AT3G07520 Length:861 Species:Arabidopsis thaliana


Alignment Length:576 Identity:102/576 - (17%)
Similarity:191/576 - (33%) Gaps:185/576 - (32%)


- Green bases have known domain annotations that are detailed below.


  Fly    55 QMRGVLNW-SHLELSYMGHTQPTLAIYVDIKCDQTQDLLEEASREQIYNQHYH---WLL-----V 110
            :|.||:.: |::.|:...|.       ..::..::..|.|..:|..:.:...|   |.|     |
plant   287 EMEGVIGFKSYIPLTEELHN-------FTLRWKRSLRLEEVVTRMSVCSIWAHDIAWSLARAAEV 344

  Fly   111 GNQSKLEFYDLFGLFNIS-----IDADVSYV-KEQIQDNNDSVAYAVHDVYNNGKIIGGQLNVTG 169
            .....|..|||......|     :..|:.:: |:.|.|.     :.:.::...|:...|..| :|
plant   345 AKLPGLSVYDLLEAIPESAKHKGLSGDIKFIDKKFISDK-----FEIVNMIGRGERSVGLWN-SG 403

  Fly   170 SHEMSCDPFVCRRTRHLSSLQ--------------------KRSKYGNREQLTDVVLRVATVVTQ 214
            |       |:..|.|.|||.:                    |..::|.:::|.  ||..|..:|.
plant   404 S-------FISNRRRRLSSTKALETIIWPGGSTRIPKIRSLKEKRHGKKKKLR--VLVPAGNITP 459

  Fly   215 RPLTLSDDELIRFLSQEN---DTHIDSLARFGFHLTLI----------LRDLLHCKMKFIFSDSW 266
            :.|.:..|......:...   |....|:..|.:.:..|          ..||::        ..:
plant   460 QILEVKTDFKTGVTAATGYCIDVFETSILPFNYEVEYIPWPGAINYKNYNDLVY--------TLY 516

  Fly   267 SKSDVVGGSVGAVVDQTADLTATP--SLATEGRLKY--LSAIIETGFFRSVCIFRTPHNAGLRGD 327
            |:.|....:||       |:|.|.  ||..:..|.:  :...:.|...:|:.|.           
plant   517 SQKDKYDAAVG-------DITITDNRSLYVDFTLPFTDMGLAVVTAKDKSMWII----------- 563

  Fly   328 VFLQPFSPL---VWYLFGGVLSLIGVLLWITFYMECKRMQKRWRLDYLPSL---LSTFLISFGAA 386
                 |.||   :|........|.|.::|:        :::....|:..|.   :.|.|      
plant   564 -----FKPLTLSLWLTIASFFILTGAIVWL--------IERHDNADFQGSCFQQIGTLL------ 609

  Fly   387 CIQSSSLI------PRSAGGRLIYFALFLISFIMYNYYTSVVVSSLLSSPVKSKIKTMRQLAESS 445
            |...|:|:      .:....|.:.........|:.:.||:.:.|.:....::. :|:...:...|
plant   610 CFGFSTLVFAHRERLQHNMSRFVVIVWIFAVLILTSNYTATLTSVMTVQQIRG-LKSNENIGFFS 673

  Fly   446 LTV-----------------GLEPL-PFTKSYLN------YSRLPEIHLFIKRKIESQTQNPELW 486
            .::                 ||:.. .||.:..|      ...:|.:.||:.:            
plant   674 ASIAANVVNDNPTFQGPRYKGLKTADDFTNALRNGTISFIVDEVPYVKLFVAK------------ 726

  Fly   487 LPAEQGVLRVRDNPGYVYVFETSS-----GYAYVERYFTAQEICDLNEVLFRPEQL 537
                        :|....:.||.|     |:|:.:.....|::....|.|.|.|:|
plant   727 ------------HPSEFVIVETESVTNGFGFAFQKGSPLVQKVSREIEKLRRTEKL 770

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ir75aNP_649012.2 Lig_chan 337..603 CDD:306551 38/239 (16%)
GLR1.4NP_187408.2 PBP1_GABAb_receptor 47..410 CDD:107361 28/142 (20%)
ANF_receptor 64..390 CDD:279440 22/114 (19%)
GluR_Plant 448..778 CDD:270404 67/395 (17%)
Periplasmic_Binding_Protein_Type_2 476..>657 CDD:304360 38/225 (17%)
Lig_chan 570..810 CDD:278489 38/240 (16%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG1052
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR18966
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
22.000

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