DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Ir75a and grik5

DIOPT Version :9

Sequence 1:NP_649012.2 Gene:Ir75a / 39982 FlyBaseID:FBgn0036757 Length:629 Species:Drosophila melanogaster
Sequence 2:NP_001315085.1 Gene:grik5 / 798791 ZFINID:ZDB-GENE-070821-6 Length:1067 Species:Danio rerio


Alignment Length:674 Identity:127/674 - (18%)
Similarity:241/674 - (35%) Gaps:194/674 - (28%)


- Green bases have known domain annotations that are detailed below.


  Fly    79 IYVDIKCDQTQDLLEEASREQIYNQHYHWLL-------------VGNQSKLEFYDLFGL------ 124
            |.:|.....:..:|::||...:.:..|.::|             |..||.:..:.:|..      
Zfish   227 IIIDANASISYLILKKASELGMTSAFYKYILTTMDFPLLWLDDIVDEQSNIVGFSMFNTTHPFYL 291

  Fly   125 -----FNIS--------------------IDADVSYVKEQIQDNNDSVAYAVH-------DVYNN 157
                 .|:|                    .|| |..|...:|:.|.|....|.       .::.:
Zfish   292 EFIRSLNLSWREGCDINPYPGPALSSALLFDA-VHVVVSAVQELNRSQEIGVKPLSCTSPQIWQH 355

  Fly   158 GKIIGGQL------NVTGSHEMSCDPFVCRRTRHLSSLQKRSKYGNRE------------QLTDV 204
            |..:...|      .:||..|.:...   :||.:...:.::.:.|::|            ..|.:
Zfish   356 GTSLMNYLRMVEYDGLTGRVEFNSKG---QRTNYTLHILEKHRGGHKEIGIWYSNNTLLMNSTSL 417

  Fly   205 VLRVATVVTQRPL----TLSDDELIRFLSQENDTHIDSLARFGFHLTLILRDLLHCKMKFIF--- 262
            .:.|:..:..:.|    .|.:..::|.::.:.....:....|...:...|.|:|    ||.:   
Zfish   418 DINVSETLANKSLIITTILENPYVMRKINYQEFEGNEQYEGFCVDMLRELSDIL----KFTYRIK 478

  Fly   263 ------------SDSWSKSDVVGGSVGAVVDQTADLTATPSLATEGRLKYLS-----AIIETGFF 310
                        :.||:      |.||.::::.|||.......|..|.|.:.     ..:.....
Zfish   479 LVDDGLYGAPEPNGSWT------GMVGELINRKADLAVAAFTITSEREKVIDFSKPFMTLGISIL 537

  Fly   311 RSVCIFRTPHNAGLRGDVFLQPFSPLVW-YLFGGVLSLIGVLL---------WITFYMECKRMQK 365
            ..|.|.|.|....     ||.||||.|| ::....|::..||.         |...: .|.| ::
Zfish   538 YRVHIGRKPGYFS-----FLDPFSPAVWLFMLLAYLAVSCVLFLSARLSPYEWYNPH-PCLR-ER 595

  Fly   366 RWRLDYLPSLLSTFLISFGAACIQSSSLIPRSAGGRLIYFALFLISFIMYNYYTSVVVSSLLSSP 430
            |..|:...:|.::.....|....|.|.::||:...|.:....:..:.|:.:.||:.:.:.|....
Zfish   596 RDLLENQYTLGNSLWFPVGGFMQQGSEIMPRALSTRCVSGVWWAFTLIIISSYTANLAAFLTVQR 660

  Fly   431 VKSKIKTMRQLAE------------SSLTVGLEPLPFTKS-YLNYSRLPEIHLFIKRKIESQTQN 482
            ::..|::...||:            |::|.      |..| |..|.|:.. :::.|:        
Zfish   661 MEVPIESPDDLADQTNIQYGTIHGGSTMTF------FMNSRYQTYQRMWN-YMYSKQ-------- 710

  Fly   483 PELWLPA-EQGVLRVRDNPGYVYVFETSSGYAYVERYFTAQEICDLNEV---------------- 530
            |.:::.: |:|:.|| .|..|.::.|::     :..|..:.. |:|.::                
Zfish   711 PSVFVKSTEEGIARV-VNSKYAFLLEST-----MNEYHRSLN-CNLTQIGGLLDTKGYGIGMPLG 768

  Fly   531 -LFRPE-QLFYTHLHRNSTYKELFRLRFLRILETGVYRKQRSYWVHMKLHCVAQNFVITVGMEYV 593
             .||.| .|....|..|:      ||..|:          |.:|...|......:....:|||.:
Zfish   769 SPFRDELSLAVLQLQENN------RLEILK----------RRWWEGGKCPKEEDHRAKGLGMENI 817

  Fly   594 APLLLMLICADILVVVILLVELAW 617
            ..:.::|||..|:.|.:.::|..|
Zfish   818 GGIFVVLICGLIIAVFVAVMEFVW 841

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ir75aNP_649012.2 Lig_chan 337..603 CDD:306551 60/307 (20%)
grik5NP_001315085.1 PBP1_iGluR_Kainate_KA1_2 38..412 CDD:107389 30/188 (16%)
ANF_receptor 55..392 CDD:279440 28/168 (17%)
Periplasmic_Binding_Protein_Type_1 <313..383 CDD:299141 13/73 (18%)
Periplasmic_Binding_Protein_Type_2 427..797 CDD:304360 83/424 (20%)
Lig_chan 558..828 CDD:278489 61/309 (20%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C170591252
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
21.840

Return to query results.
Submit another query.