DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Ir75a and grin3ba

DIOPT Version :10

Sequence 1:NP_649012.2 Gene:Ir75a / 39982 FlyBaseID:FBgn0036757 Length:629 Species:Drosophila melanogaster
Sequence 2:XP_021323058.1 Gene:grin3ba / 566411 ZFINID:ZDB-GENE-070912-354 Length:1118 Species:Danio rerio


Alignment Length:498 Identity:97/498 - (19%)
Similarity:181/498 - (36%) Gaps:126/498 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly   206 LRVATVVTQRPLTLS---DDE----------------------LIRFLSQENDTHIDSLAR---F 242
            |||.|:| :.|...:   |:|                      |.|.|.|.|.:.:.:..|   :
Zfish   458 LRVVTLV-EHPFVFTREVDEEGQCPAGQLCLDPQTNNSEVLNQLFRELEQTNSSSLPTDMRKCCY 521

  Fly   243 GFHLTLI--LRDLLHCKMK-FIFSD----SWSKSDVVGGSVGAVVDQTADLTATPSLATEGRLKY 300
            |:.:.|:  |.:.:|.:.. :|..|    :| |.....|.||.::...||:..|.......|   
Zfish   522 GYCIDLLEKLAEDMHFEFDLYIVGDGKYGAW-KGGRWSGLVGDLLSGVADMAVTSFSINSAR--- 582

  Fly   301 LSAIIE--TGFFRSV--CIFRTPHNAGLRGDVFLQPFSPLVWYLFGGVLSLIGV-LLWITFYMEC 360
             |.:|:  :.||.:.  .:.|:...|...| .|:.   ||.|.::.|:...:.: .|:||.|   
Zfish   583 -SRVIDFTSPFFSTSLGILVRSKDTAAPIG-AFMW---PLHWSMWVGIFVALHITALFITLY--- 639

  Fly   361 KRMQKRWR---------------LDYLPSLLSTFLISFGAACIQSSSLIPRSAGGRLIYFALFLI 410
                 .|.               ..|..:|...:.|.||...   :|..|:...||.:.....:.
Zfish   640 -----EWNSPFGMTPHGRNRIRVFSYSSALNLCYAILFGRTV---ASKTPKCWTGRFLMNLWAIF 696

  Fly   411 SFIMYNYYTSVVVSSLLSSPVKSKIKTMR--QLAESSL--TVGLEPLPFTKSYLNYSRLPEIHLF 471
            ..::.:.||:.:.:.::......::..:.  :|...||  ..|.......:.|:..| .||:|.:
Zfish   697 CLLVLSSYTANLAAVMVGEKTFEEVSGIHDVKLHHPSLGFRFGTVRESSAEDYVKKS-FPEMHEY 760

  Fly   472 IKRKIESQTQNPELWLPAEQGVLRVRDNPGYVYVFETSSGYAYVERYFTAQEICDL--------- 527
            ::|..:..|.:         ||..::.:|..:..|....  |.::...:....|.|         
Zfish   761 MRRFNKPTTPD---------GVSTLKTDPPQLDAFIMDK--ALLDYEVSIDADCKLLTVGKPFAI 814

  Fly   528 ---------NEVLFRPEQLFYTHLHRNSTYKELFRLRFLRILETGVYRKQRSYWVHMKLHCVAQN 583
                     |..|.| ....|...:::..|.::...::.:::..|    :|.:.|...|....|:
Zfish   815 EGYGIGLPQNSPLTR-NVSEYVSRYKSDGYMDMLHDKWYKVVPCG----KRVFAVTETLQMGIQH 874

  Fly   584 FVITVGMEYVAPLLLMLICADIL-VVVILLVELAWKRFFTRHL 625
            |          ..|.:|:|..:. .::.||.|.|:.||...||
Zfish   875 F----------SGLFVLLCVGVAGALLTLLGEHAFFRFILPHL 907

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ir75aNP_649012.2 Periplasmic_Binding_Protein_Type_2 455..572 CDD:473866 21/134 (16%)
grin3baXP_021323058.1 Periplasmic_Binding_Protein_type1 36..427 CDD:471960
PBP2_iGluR_NMDA_Nr3 457..852 CDD:270438 80/427 (19%)
Lig_chan 618..885 CDD:459656 50/304 (16%)
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.