DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Ir75a and grin3a

DIOPT Version :9

Sequence 1:NP_649012.2 Gene:Ir75a / 39982 FlyBaseID:FBgn0036757 Length:629 Species:Drosophila melanogaster
Sequence 2:XP_009303361.1 Gene:grin3a / 564832 ZFINID:ZDB-GENE-130530-780 Length:1111 Species:Danio rerio


Alignment Length:529 Identity:104/529 - (19%)
Similarity:181/529 - (34%) Gaps:197/529 - (37%)


- Green bases have known domain annotations that are detailed below.


  Fly   184 RHLSSLQKRSKYGNREQLTDVVLRVATVVTQRPLTLS---DDE---------------------- 223
            ||.|.|.               |||.|:| :.|...:   |||                      
Zfish   514 RHSSRLH---------------LRVVTLV-EHPFVFTRDVDDEGLCPAGQLCLDPLTNDTALLES 562

  Fly   224 LIRFLSQENDT------------HIDSLAR----FGFHLTL-ILRDLLHCKMKFIFSDSWSKSDV 271
            |.:.|...|||            .||.|.:    .||...| |:.|..:...|   :..|:    
Zfish   563 LFQGLQGANDTVPLEFKKCCYGYCIDLLEKLAEDMGFDFDLYIVGDGKYGAYK---NGRWT---- 620

  Fly   272 VGGSVGAVVDQTADLTATPSLATEGRLKYLSAIIE--TGFFRSV--CIFRTPHNAGLRGDVFLQP 332
              |.||.::...|.|..|.......|    |.:|:  :.||.:.  .:.||...|...| .|:. 
Zfish   621 --GLVGDLMSGAAHLAVTSFSINSAR----SQVIDFTSPFFSTSLGILVRTRDTAAPIG-AFMW- 677

  Fly   333 FSPLVWYLFGGV-LSLIGVLLWITFYMECK-------RMQKRWRLDYLPSLLST-FLISFG-AAC 387
              ||.|.::.|: :||....:::|.| |.|       |.:.|.|:....|.|:. :.|.|| .|.
Zfish   678 --PLHWSMWLGIFVSLHVTAVFLTLY-EWKSPFGMTPRGRNRDRVFSFSSALNVCYAILFGRTAA 739

  Fly   388 IQSSSLIPRSAGGRLI-----YFALFLISFIMYNYYTSVVVSSLLSSPVKSKIKTMRQLA----- 442
            |:.    |:...||.:     .|.||.:|     .||:.:.:.::..      ||..||:     
Zfish   740 IKP----PKCWTGRFLMNLWAIFCLFCLS-----TYTANLAAVMVGE------KTYEQLSGIHDP 789

  Fly   443 ---------------ESSLTVGLEPLPFTKSYLNYSRLPEIHLFIKRKIESQTQNPELWLPAEQG 492
                           |||          .:.|:..| .||:|.:::|.....|.:         |
Zfish   790 KLHHPSQGFRFGTVRESS----------AEDYVKKS-FPEMHEYMRRYNAPTTPD---------G 834

  Fly   493 VLRVRDNP---------------------GYVYVFETSSGYAYVERYFTAQEICDLNEVLFRPEQ 536
            :..::|:|                     .|:.:..|..|....:.......|.:|         
Zfish   835 IDHLKDDPQKLDAFIMDKALLDYWAHADKXYISLLLTGYGIGLKQNSPLTSNISEL--------- 890

  Fly   537 LFYTHLHRNSTYKELFRLRFLRILETGVYRKQRSYWVHMKLHCVAQNFVITVGMEYVAPLLLMLI 601
               ...:::..:.::...::.:::..|    :||:         |....:.:|:::.:.|.:|| 
Zfish   891 ---VSQYKSDGFMDMLHDKWYKVVPCG----KRSF---------AVTETLQMGIKHFSGLFVML- 938

  Fly   602 CADILVVVI 610
            |..:.:.::
Zfish   939 CVGVALSLL 947

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ir75aNP_649012.2 Lig_chan 337..603 CDD:306551 57/321 (18%)
grin3aXP_009303361.1 Periplasmic_Binding_Protein_Type_1 36..502 CDD:299141
ANF_receptor 132..452 CDD:279440
PBP2_iGluR_NMDA_Nr3 518..908 CDD:270438 92/470 (20%)
Lig_chan 682..941 CDD:278489 57/320 (18%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C170591228
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG1052
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
21.830

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