DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Ir75a and grin2bb

DIOPT Version :9

Sequence 1:NP_649012.2 Gene:Ir75a / 39982 FlyBaseID:FBgn0036757 Length:629 Species:Drosophila melanogaster
Sequence 2:NP_001121809.1 Gene:grin2bb / 559976 ZFINID:ZDB-GENE-061207-27 Length:1770 Species:Danio rerio


Alignment Length:738 Identity:126/738 - (17%)
Similarity:224/738 - (30%) Gaps:302/738 - (40%)


- Green bases have known domain annotations that are detailed below.


  Fly    75 PTLAIYVDIKC--DQTQDLLEEASREQIYNQHYHW----LLVGNQSKLEFYDLFGLFNISIDADV 133
            |.:.:|    |  ::...:.|.|....:....|.|    |:.|:...:......||.::|.|...
Zfish   300 PVILLY----CTKEEATTIFEVAHSVGLTGYGYTWIVPSLVAGDTDNVPNVFPTGLISVSYDEWD 360

  Fly   134 SYVKEQIQDNNDSVAYAVHDVYNNGKIIGGQLNVTGSHEM---SCDPFVCRRTRHLSSLQKRSKY 195
            ..::.:::|....:|.|...:..:          .|.|.:   .|         |.:..:|.||.
Zfish   361 YGLEARVRDAVAIIAMATSTMMLD----------RGPHTLLKSGC---------HGAPDKKGSKS 406

  Fly   196 GNREQLTDVVLRVATVVT--QRPLTLSDDE-------LIRFLSQEN------------------- 232
            ||..:    |||....||  .|.|:.|:|.       :|..|::|.                   
Zfish   407 GNPNE----VLRYLMNVTFEGRNLSFSEDGFQMHPKLVIILLNKERQYERVGKWENGSLAMKYHV 467

  Fly   233 ----DTHIDSLARFGFHLTLI--------------------LRDLLHCK---------------- 257
                :.:.|:..|...||:::                    :|:.:.|:                
Zfish   468 WPRFELYSDAEEREDDHLSIVTLEEAPFVIVEDVDPLSGTCMRNTVPCRKQLKLQNLTGDSGIYI 532

  Fly   258 ------------------MKFIF--------------SDSWSKSDVVGGSVGAVVDQTADLTATP 290
                              :||.:              :.:|:      |.||.||.:.|.:....
Zfish   533 KRCCKGFCIDILKKIAKSVKFTYDLYLVTNGKHGKKINGTWN------GMVGEVVLKNAHMAVGS 591

  Fly   291 SLATEGR---LKYLSAIIETGFFRSVCIFRTPHNAGLRGDVFLQPFSPLVWYLFGGVLSLIGVLL 352
            ....|.|   :.:....||||.  ||.:.|:  |..:....||:|||..||.:...:|.::..:.
Zfish   592 LTINEERSEVIDFSVPFIETGI--SVMVSRS--NGTVSPSAFLEPFSADVWVMMFVMLLIVSAVA 652

  Fly   353 WITF-------YMEC---------------KRMQKRWRLDYLPSL--------LSTFLISFGAAC 387
            ...|       |..|               |.:...|.|.:..|:        .|..::|..|  
Zfish   653 VFVFEYFSPVGYNRCLADGREPGGPSFTIGKAIWLLWGLVFNNSVPVQNPKGTTSKIMVSVWA-- 715

  Fly   388 IQSSSLIPRSAGGRLIYFA-LFLIS-------FIMYNYYTSVVVSSLLS----------SP---- 430
                            :|| :||.|       |::...|...|..  ||          ||    
Zfish   716 ----------------FFAVIFLASYTANLAAFMIQEEYVDQVTG--LSDKKFQHPNDFSPPFRF 762

  Fly   431 -----------VKSKIKTMRQLAES-----------SLTVG-LEPLPFTKSYLNYSRLPEIHLFI 472
                       :::..|.|.....|           ||..| |:...:..:.|||          
Zfish   763 GTVPNGSTERNIRNNYKEMHSYMTSFHQKNVNEALHSLKSGKLDAFIYDAAVLNY---------- 817

  Fly   473 KRKIESQTQNPELWLPAEQGVLRVRDNPGYVYVFETSSGYAYVERYFTAQEICDLNEVLFRPEQL 537
                         ....::|...|....||::   .::||...                      
Zfish   818 -------------MAGRDEGCKLVTIGSGYIF---ATTGYGIA---------------------- 844

  Fly   538 FYTHLHRNSTYKELFRLRFLRILETGVYRKQRSYWVHMKLHCVAQNFVIT--VGMEYVAPLLLML 600
                :.::|.:|....|..|::...|...:..:.|:....| ..:|.|::  :.::.:|.:..||
Zfish   845 ----IQKDSGWKRAVDLAILQLFGDGEMEELEALWLTGICH-NEKNEVMSSQLDVDNMAGVFYML 904

  Fly   601 ICADILVVVILLVE--LAWK-RF 620
            ..|..|.::..:.|  ..|: ||
Zfish   905 GAAMALSLITFIAEHLFYWQLRF 927

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ir75aNP_649012.2 Lig_chan 337..603 CDD:306551 53/342 (15%)
grin2bbNP_001121809.1 PBP1_iGluR_NMDA_NR2 107..470 CDD:107373 37/196 (19%)
ANF_receptor 138..442 CDD:279440 34/168 (20%)
PBP2_iGluR_NMDA_Nr2 482..882 CDD:270436 76/482 (16%)
Lig_chan 636..908 CDD:278489 53/344 (15%)
NMDAR2_C 919..1770 CDD:287527 3/9 (33%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C170591185
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG1052
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
21.830

Return to query results.
Submit another query.