DRSC/TRiP Functional Genomics Resources

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Protein Alignment Ir75a and grik4

DIOPT Version :9

Sequence 1:NP_649012.2 Gene:Ir75a / 39982 FlyBaseID:FBgn0036757 Length:629 Species:Drosophila melanogaster
Sequence 2:XP_021322087.1 Gene:grik4 / 556582 ZFINID:ZDB-GENE-070821-5 Length:965 Species:Danio rerio


Alignment Length:670 Identity:140/670 - (20%)
Similarity:246/670 - (36%) Gaps:169/670 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly    76 TLAIYVDIKCDQTQDLLEEASREQIYNQHYHWLLVGNQ-SKLEFYDL---------FGLFNIS-- 128
            |..|.||.....:..:||.||...:.:.:|.::|...: |.|...||         |.:||.:  
Zfish   212 TATIIVDANATMSHVILERASELGMLSVYYTYILTSLEFSLLRLDDLADQRVNIVGFSVFNRTHP 276

  Fly   129 -IDADVSYVKEQIQDNNDSVAY------------AVHDVYNNGKIIGGQLNVTGSHEMSCDPFVC 180
             ....|..:....|:|.|...:            |||.|....:.:....|| |:.::||..  .
Zfish   277 FFQDFVLSLNRSWQENCDHAPFAGTPLSSALLFDAVHTVVAAVQELNRSQNV-GATQLSCKS--S 338

  Fly   181 RRTRHLSSLQ---------------------KRSKYGNR-----------------EQ------- 200
            :...|.:||.                     :||.|..|                 ||       
Zfish   339 KIWEHGTSLMNYLRMVELEGLTGHIEFNSKGQRSNYALRIMQNSRDGLRQIGQWHSEQGLSMERK 403

  Fly   201 -----LTDVVLRVATVVTQRPLTLSDDELIRFLSQENDTHIDSLARF-GFHLTLI--LRDLLHCK 257
                 :||.:......:|    |:.::..:  :.:.|...::...|: ||.:.::  |.|:|..|
Zfish   404 LPSLNVTDTLFNTTLTIT----TILENPYV--MLRANHQELEGNDRYEGFCVDMLKELADILKFK 462

  Fly   258 MKF-IFSD----------SWSKSDVVGGSVGAVVDQTADLTATPSLATEGRLKYLS-----AIIE 306
            .:. :..|          :|:      |.||.::.:.|||.......|..|.|.:.     ..:.
Zfish   463 YRIRLVGDGVYGVPGANGTWT------GMVGELISRKADLAVAALTITAEREKVIDFSKPFMTLG 521

  Fly   307 TGFFRSVCIFRTPHNAGLRGDVFLQPFSPLVW------YL-FGGVLSLIGVLLWITFYMECKRMQ 364
            ......|.|.|.|....     ||.||||.||      || ...||.|:..|....:|.....::
Zfish   522 ISIMYRVHIGRRPGYFS-----FLDPFSPGVWLFMLLAYLAVSCVLFLVARLTPYEWYNPHPCLK 581

  Fly   365 KRWRL---DYLPSLLSTFLISFGAACIQSSSLIPRSAGGRLIYFALFLISFIMYNYYTSVVVSSL 426
            .|..|   .|  ||.::|....|....|.|::.||:...|.:....:..:.|:.:.||:.:.:.|
Zfish   582 GRCSLLINQY--SLGNSFWFPVGGFMQQGSTIAPRALSTRCVSGVWWAFTLIIISSYTANLAAFL 644

  Fly   427 LSSPVKSKIKTMRQLAESSLTV-----GLEPLPFTKS--YLNYSRL--------PEIHLFIKRKI 476
            ....::..|:::..||:.:...     |...:.|.::  |..|.|:        |.:  |:|   
Zfish   645 TVQRMEVPIESVDDLADQTAIEYGTMHGGSTMTFFQNSRYQTYQRMWNFMYSKQPSV--FVK--- 704

  Fly   477 ESQTQNPELWLPAEQGVLRVRDNPGYVYVFETSSGYAYVERYFTAQEICDLNEVLFRPEQLFY-T 540
                       ..|:|:.||. |..|.|:.|::....|.:|.      |:|.::....:...| .
Zfish   705 -----------STEEGIARVL-NSNYAYLLESTMNEYYRQRN------CNLTQIGGLLDTKGYGI 751

  Fly   541 HLHRNSTYKELFRLRFLRILETG-VYRKQRSYWVHMKLHCVAQNFVITVGMEYVAPLLLMLICAD 604
            .:...|.|::.|.|..||:.|.. :...:|.:|...|......:....:|||.:..:.::|:|..
Zfish   752 GMPLGSVYRDEFDLAILRLQEENRLEILKRKWWDGGKCPKEEDHRAKGLGMENIGGIFVVLVCGL 816

  Fly   605 ILVVVILLVELAWKRFFTRH 624
            ::.:.:.::|..|   ..||
Zfish   817 LVAIFMAVLEFVW---MLRH 833

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ir75aNP_649012.2 Lig_chan 337..603 CDD:306551 63/292 (22%)
grik4XP_021322087.1 Periplasmic_Binding_Protein_Type_1 26..400 CDD:324556 39/190 (21%)
PBP2_iGluR_kainate_KA1 425..785 CDD:270442 86/397 (22%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C170590959
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG1052
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR18966
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
54.840

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