DRSC/TRiP Functional Genomics Resources

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Protein Alignment Ir75a and grik2

DIOPT Version :9

Sequence 1:NP_649012.2 Gene:Ir75a / 39982 FlyBaseID:FBgn0036757 Length:629 Species:Drosophila melanogaster
Sequence 2:XP_021322472.1 Gene:grik2 / 556013 ZFINID:ZDB-GENE-080414-1 Length:908 Species:Danio rerio


Alignment Length:688 Identity:137/688 - (19%)
Similarity:251/688 - (36%) Gaps:189/688 - (27%)


- Green bases have known domain annotations that are detailed below.


  Fly     4 VQLANFVLDNLVQSRIGFIVLFHCWQSDESLKFAQQFMKPIHPILVYHQFVQMRGVLNWSHLELS 68
            |.:..|.:.|...|::..|:  ..|    |::..|...||...:|  ..|:.....|.:..:.:.
Zfish   274 VNMTGFRILNTENSQVSSII--EKW----SMERLQAPPKPDSGLL--DGFMTTDAALMYDAVHVV 330

  Fly    69 YMGHTQPTLAIYVDIKCDQTQ---------DLLEEASREQIYNQHYHWLLVGNQSKLEFYDLFGL 124
            .:...|........::|::.:         .|::||          ||  .|...::.|....||
Zfish   331 AVAVQQSPQITVSSLQCNRHKPWRFGNRFMTLIKEA----------HW--DGLTGRINFNRTNGL 383

  Fly   125 FNISIDADVSYVKEQ------IQDNNDSVAYAVHDVYNNGKIIGGQLNVTGSHEMSCDPFVCRRT 183
             ....|.||..:||:      ..|....:     ::..|.|  |...|||.|             
Zfish   384 -RTDFDLDVISLKEEGLEKIGTWDPASGL-----NMTENQK--GKTANVTDS------------- 427

  Fly   184 RHLSSLQKRSKYGNREQLTDVVLRVATVV---TQRPLTLSDD------ELIRFLSQENDTHIDSL 239
                       ..||..:...:|....|:   :.:||..:|.      :|:|.|:        ::
Zfish   428 -----------LSNRSLVVSTILEEPYVMFKKSDKPLYGNDRFEGYCVDLLRELA--------AI 473

  Fly   240 ARFGFHLTLILRDLLHCKMKFIFSDSWSKSDVVGGSVGAVVDQTADLTATPSLATEGRLK---YL 301
            ..||:.|.|:.......:.:  .|..|:      |.|..::|..|||...|...|..|.|   :.
Zfish   474 LGFGYELRLVEDGRYGAQDE--SSGQWN------GMVRELMDHKADLAVAPLAITYVREKVIDFS 530

  Fly   302 SAIIETGFFRSVCIFRTPH--NAGLRGDVFLQPFSPLVW-YLFGGVLSLIGVLLWITFYMECKRM 363
            ...:..|.  |: ::|.|:  |.|:..  ||.|.||.:| |:....|.:..||..|..:...:  
Zfish   531 KPFMTLGI--SI-LYRKPNGTNPGVFS--FLNPLSPDIWMYILLAYLGVSCVLFVIARFSPYE-- 588

  Fly   364 QKRWRLDYLP--------------SLLSTFLISFGAACIQSSSLIPRSAGGRLI-----YFALFL 409
               |   |.|              :||::|....||...|.|.|:|::...|::     :|.|.:
Zfish   589 ---W---YNPHPCNPDSDVVENNFTLLNSFWFGVGALMQQGSELMPKALSTRIVGGIWWFFTLII 647

  Fly   410 ISFIMYNYYTSVVVSSLLSSPVKSKIKTMRQLA-ESSLTVGLEPLPFTKSYLNYSRLPEIHLFIK 473
            ||     .||:.:.:.|....::|.|.:...|| ::.:..|:.....|.::           |.|
Zfish   648 IS-----SYTANLAAFLTVERMESPIDSADDLAKQTKIEYGVVEDGSTMTF-----------FKK 696

  Fly   474 RKIE---------SQTQNPELWLPAEQGVLRVRDNPGYVYVFETSSGYAYVERYFTAQEICDLNE 529
            .||.         |..::..:....|:|:.||..: .|.::.|:::    :|  |..|..|:|.:
Zfish   697 TKISTYDKMWEFMSSRRHSVMVKSIEEGIERVLTS-DYAFLMESTT----IE--FVTQRNCNLTQ 754

  Fly   530 VLFRPEQLFY-THLHRNSTYKELFRLRFLRILETGVYRKQRSYWVHMKLHCVAQNF--------- 584
            :....:...| ......|.|::...:..|::.|.|            |||.:.:.:         
Zfish   755 IGGLIDSKAYGVGTPMGSPYRDKITIAILQLQEEG------------KLHMMKEKWWRGNGCPEE 807

  Fly   585 ----VITVGMEYVAPLLLMLICADILVVVILLVELAWK 618
                ...:|::.:..:.::|....:|.|.:.:.|..:|
Zfish   808 ENKEASALGVQNIGGIFIVLAAGLVLSVFVAVGEFLYK 845

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ir75aNP_649012.2 Lig_chan 337..603 CDD:306551 59/309 (19%)
grik2XP_021322472.1 PBP1_iGluR_Kainate 37..414 CDD:380605 30/165 (18%)
Periplasmic_Binding_Protein_Type_2 430..800 CDD:419667 94/433 (22%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C170591242
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
21.840

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