DRSC/TRiP Functional Genomics Resources

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Protein Alignment Ir75a and Gria3

DIOPT Version :9

Sequence 1:NP_649012.2 Gene:Ir75a / 39982 FlyBaseID:FBgn0036757 Length:629 Species:Drosophila melanogaster
Sequence 2:NP_001268858.2 Gene:Gria3 / 53623 MGIID:95810 Length:888 Species:Mus musculus


Alignment Length:538 Identity:105/538 - (19%)
Similarity:208/538 - (38%) Gaps:88/538 - (16%)


- Green bases have known domain annotations that are detailed below.


  Fly   129 IDADVSYVKEQIQDNNDSVAYAVHDVYNNGKIIGGQLNVTGSHEM----SCDPFVCRRTRHLSSL 189
            ||.:.:....|:|....::.:..:....|..|...::.|:||.:.    ..:.||     ..|..
Mouse   346 IDIERALKMVQVQGMTGNIQFDTYGRRTNYTIDVYEMKVSGSRKAGYWNEYERFV-----PFSDQ 405

  Fly   190 QKRSKYGNREQLTDVVLRVATVVTQRPLTLSDDELIRFLSQENDTHIDSLARF-GFHLTLILRDL 253
            |..:...:.|..|.||    |.:.:.|..         :.::|...::...|: |:.:.|.....
Mouse   406 QISNDSSSSENRTIVV----TTILESPYV---------MYKKNHEQLEGNERYEGYCVDLAYEIA 457

  Fly   254 LHCKMKFIFSDSWSKSDVVG---------------GSVGAVVDQTADLTATP---SLATEGRLKY 300
            .|.::|:       |..:||               |.||.:|...||:...|   :|..|..:.:
Mouse   458 KHVRIKY-------KLSIVGDGKYGARDPETKIWNGMVGELVYGRADIAVAPLTITLVREEVIDF 515

  Fly   301 LSAIIETGFFRSVCIFRTPHNAGLRGDVFLQPFSPLVWYLFGGVLSLIGVLLWITFYMECKRMQK 365
            ....:..|.  |:.| :.|..:......||.|.:..:|...  |.:.|||.  :..::..:....
Mouse   516 SKPFMSLGI--SIMI-KKPQKSKPGVFSFLDPLAYEIWMCI--VFAYIGVS--VVLFLVSRFSPY 573

  Fly   366 RWRLD---------YLP-------SLLSTFLISFGAACIQSSSLIPRSAGGRLIYFALFLISFIM 414
            .|.|:         ..|       .:.::...|.||...|...:.|||..||::....:..:.|:
Mouse   574 EWHLEDNNEEPRDPQSPPDPPNEFGIFNSLWFSLGAFMQQGCDISPRSLSGRIVGGVWWFFTLII 638

  Fly   415 YNYYTSVVVSSLLSSPVKSKIKTMRQLA-ESSLTVGLEPLPFTKSYLNYSRLPEIHLFIKRKIES 478
            .:.||:.:.:.|....:.|.|::...|| ::.:..|......||.:...|:   |.::.|.....
Mouse   639 ISSYTANLAAFLTVERMVSPIESAEDLAKQTEIAYGTLDSGSTKEFFRRSK---IAVYEKMWSYM 700

  Fly   479 QTQNPELWL-PAEQGVLRVRDNPG-YVYVFETSSGYAYVERYFTAQEICDLNEVLFRPEQLFY-T 540
            ::..|.::. ....||.|||.:.| :.::.|::     :..|...::.||..:|....:...| .
Mouse   701 KSAEPSVFTKTTADGVARVRKSKGKFAFLLEST-----MNEYIEQRKPCDTMKVGGNLDSKGYGV 760

  Fly   541 HLHRNSTYKELFRLRFLRILETGVYRKQRSYWVHMKLHCVAQNF-----VITVGMEYVAPLLLML 600
            ...:.|..:....|..|::.|.|:..|.::.|.:.|..|.|::.     ...:.:..||.:..:|
Mouse   761 ATPKGSALRTPVNLAVLKLSEQGILDKLKNKWWYDKGECGAKDSGSKDKTSALSLSNVAGVFYIL 825

  Fly   601 ICADILVVVILLVELAWK 618
            :....|.:::.|:|..:|
Mouse   826 VGGLGLAMMVALIEFCYK 843

Known Domains:


Indicated by green bases in alignment.

Software error:

Illegal division by zero at /www/www.flyrnai.org/docroot/cgi-bin/DRSC_prot_align.pl line 591.

For help, please send mail to the webmaster (ritg@hms.harvard.edu), giving this error message and the time and date of the error.

GeneSequenceDomainRegion External IDIdentity
Ir75aNP_649012.2 Lig_chan 337..603 CDD:306551 57/290 (20%)
Gria3NP_001268858.2 PBP1_iGluR_AMPA_GluR3 29..403 CDD:380610 11/61 (18%)
PBP2_iGluR_AMPA 416..799 CDD:270433 82/417 (20%)
Glutamate binding 502..504 1/1 (100%)