DRSC/TRiP Functional Genomics Resources

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Protein Alignment Ir75a and grin2da

DIOPT Version :9

Sequence 1:NP_649012.2 Gene:Ir75a / 39982 FlyBaseID:FBgn0036757 Length:629 Species:Drosophila melanogaster
Sequence 2:XP_009292354.1 Gene:grin2da / 449864 ZFINID:ZDB-GENE-041008-124 Length:1916 Species:Danio rerio


Alignment Length:609 Identity:123/609 - (20%)
Similarity:222/609 - (36%) Gaps:177/609 - (29%)


- Green bases have known domain annotations that are detailed below.


  Fly   108 LLVGNQS-----KLEFYDLFGLFNISIDA-DVSYVKEQIQDNNDS-VAYAVHDV--YNNGK---I 160
            ::.|||:     ::.|:.     ||::.. |.|:       |||. :|..:.||  |..|:   .
Zfish   371 MMDGNQTQRVPGRIRFFS-----NITLSGRDYSF-------NNDGYLANPLLDVISYTAGRGWEE 423

  Fly   161 IGGQLNVTGSHEMSCDPFVCRRTRHLSSLQKRSKYG-------NREQLTDVVLRVATVVTQRPLT 218
            :|...|  |...:...|:              |:||       :.:.|..|.|.....|...|..
Zfish   424 VGWWEN--GVLRLRYPPW--------------SRYGPFLKPLDDSQHLRVVTLEERPFVIVEPAD 472

  Fly   219 LSDDELIRFLSQENDTHIDSL-ARFGFHLTLI---LRDLLHCKMKFIFSDSWSKSDVVG------ 273
            ......||          ||: .|...:.:::   ::.:.||...|........:.:||      
Zfish   473 PGTGSCIR----------DSVPCRLPLNNSMVVEGIQSMKHCCKGFCIDVLKRLAKIVGFTYDLY 527

  Fly   274 ----------------GSVGAVVDQTADLTATPSLATEGR---LKYLSAIIETGFFRSVCIFRTP 319
                            |.||.||.:.||:........|.|   :::....:|||.  ||.:.|: 
Zfish   528 LVTNGRHGKNIDGQWNGMVGEVVSKRADMAIGSLTINEERSEVVEFSVPFVETGI--SVMVSRS- 589

  Fly   320 HNAGLRGDVFLQPFSPLVW-YLFGGVLSLIGVLLWITFYMECKRMQKRWRLDYLPSLL------- 376
             |..:....||:|:||.|| .:|...||::.|.::|..:..        .:.|..||.       
Zfish   590 -NGTVSPSAFLEPYSPAVWVMMFVMCLSVVAVTVFIFEFFS--------PVGYNRSLQSGKTAGG 645

  Fly   377 STFLISFGA----ACIQSSSL---IPRSAGGRL--IYFALFLISFIMYNYYTSVVVSSLLSSPVK 432
            |.|.|....    |.:.::|:   .||....::  :.:|.|.:.|:.  .||:.:.:.::.   :
Zfish   646 SKFTIGKSIWLLWALVFNNSVPVENPRGTTSKIMVLVWAFFAVIFLA--SYTANLAAFMIQ---E 705

  Fly   433 SKIKTMRQLAESS----------LTVGLEPLPFTKSYLNYSRLPEIHLFI----KRKIESQTQNP 483
            ..|.|:..|::..          |..|..|...|:..:. |..|.:|.::    :|.:|...:| 
Zfish   706 EYIDTVSGLSDKKFQHPTEQYPPLRFGTVPNGSTEENIR-SNYPNMHQYMVRNNQRGVEDAIEN- 768

  Fly   484 ELWLPAEQGVLRVRDNPGYVYVFETSSGYAYVERYFTAQEICDLNEVLFRPEQLFYT-----HLH 543
                      |:......::|   .::...|:.|   ..|.|.:  :.....::|.|     .||
Zfish   769 ----------LKTGKLDAFIY---DAAVLNYMAR---KDEGCKV--MTIGSGKVFATTGYGVALH 815

  Fly   544 RNSTYKELFRLRFLRILETGVYRKQRSYWVHMKLHCVAQNFVITV-----GMEYVAPLLLMLICA 603
            :||.:|....|..|:::...........|    |..:..|..|.|     .::.:|.:..||:.|
Zfish   816 KNSRWKRPLDLALLQLVGDDEIDMLERLW----LSGICHNDKIEVMSSKLDIDNMAGVFYMLLVA 876

  Fly   604 DILVVVILLVELAWKRFFTRHLTF 627
                :.:.|:..||:     ||.:
Zfish   877 ----MGLSLLVFAWE-----HLVY 891

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ir75aNP_649012.2 Lig_chan 337..603 CDD:306551 58/306 (19%)
grin2daXP_009292354.1 PBP1_iGluR_NMDA_NR2 42..441 CDD:107373 20/97 (21%)
PBP2_iGluR_NMDA_Nr2 452..851 CDD:270436 88/449 (20%)
HisJ <507..>590 CDD:223904 18/86 (21%)
Lig_chan 605..877 CDD:278489 59/312 (19%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C170591212
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG1052
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
21.830

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