DRSC/TRiP Functional Genomics Resources

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Protein Alignment Ir75a and gria1b

DIOPT Version :9

Sequence 1:NP_649012.2 Gene:Ir75a / 39982 FlyBaseID:FBgn0036757 Length:629 Species:Drosophila melanogaster
Sequence 2:NP_991293.1 Gene:gria1b / 403044 ZFINID:ZDB-GENE-020125-2 Length:917 Species:Danio rerio


Alignment Length:698 Identity:133/698 - (19%)
Similarity:252/698 - (36%) Gaps:183/698 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly    41 MKPIHPILVYHQFVQM------RGVLNWSHLELSYMGHTQPTLAIYVDIKCDQTQDLLEEASREQ 99
            :|..|.||....|:.:      :|..|.:..:|  |.:|.||::..:       ||.||..|:: 
Zfish   222 LKNYHYILANLGFLDLNLTEFRKGGANVTGFQL--MNYTNPTVSRTI-------QDWLEFDSKD- 276

  Fly   100 IYNQHYHWLLVGNQSKLEFYDLFGLFNISIDA--------------------------------- 131
                     |...:.:|::........:::.|                                 
Zfish   277 ---------LKSPKRRLKYTGALTYDGVTVMATAFQNLRKQRIDISRRGNAGECLANPPAPWGQG 332

  Fly   132 -DVSYVKEQIQDNNDSVAYAVHDVYNNGKIIGGQLNVTGSHEMSCDPFVCRRTRHLSSLQKRSKY 195
             |:....:|:|..    ....|..:|:.   |.:.|.|    :|...|.....:.:....:|.||
Zfish   333 IDIQRALQQVQFE----GLTGHVQFNDK---GHRTNFT----VSVMEFGPSGPKKVGYWNQREKY 386

  Fly   196 GNREQLTDVV---------LRVATVVTQRP---LTLSDDELIRFLSQENDTH----IDSLARFGF 244
            .:....::::         ..|.|.:.:.|   |..:.::|:     .||.:    ::..|....
Zfish   387 VSTATYSNMLNETFGLQNRTYVVTTILEAPYVMLKKNHEQLV-----GNDKYEGYCVELAAEIAK 446

  Fly   245 HLTLILRDLLHCKMKFIFSDS----WSKSDVVGGSVGAVVDQTADLTATP---SLATEGRLKYLS 302
            |:....|..|....|:...|:    |:      |.||.:|...||:...|   :|..|..:.:..
Zfish   447 HVGYSYRLELVGDGKYGARDAETMMWN------GMVGELVYGKADVAVAPLTITLVREEVIDFSK 505

  Fly   303 AIIETGFFRSVCIFR-TPHNAGLRGDVFLQPFSPLVWYLFGGVLSLIGVLLWITFYMECKRMQKR 366
            ..:..|.  |:.|.: |....|:..  ||.|.:..:|...  |.:.|||.  :..::..:.....
Zfish   506 PFMSLGI--SIMIKKPTKSKPGVFS--FLDPLAYEIWMCI--VFAYIGVS--VVLFLVSRFSPYE 562

  Fly   367 WRLD------------YLPS-----------------------------LLSTFLISFGAACIQS 390
            |..|            ..||                             :.::...|.||...|.
Zfish   563 WHADDEEETADQQNQNQPPSPEPNQSPNQSQNQREEKQEKQPEHTNEFGIFNSLWFSLGAFMQQG 627

  Fly   391 SSLIPRSAGGRLI-----YFALFLISFIMYNYYTSVVVSSLLSSPVKS--KIKTMRQLAESSLTV 448
            ..:.|||..||::     :|.|.:||....|....:.|..:: ||::|  .:....::|..:|..
Zfish   628 CDISPRSLSGRIVGGVWWFFTLIIISSYTANLAAFLTVERMV-SPIESAEDLAKQTEIAYGTLDG 691

  Fly   449 GLEPLPFTKSYLNYSRLPEIHLFIKRKIESQTQNPELWL-PAEQGVLRVRDNPG-YVYVFETSSG 511
            |     .||.:...|:   |.:|.|.....::..|.::: ..::||:|||.:.| |.|:.|::  
Zfish   692 G-----STKEFFRRSK---IAVFEKMWSYMKSAEPTVFVKTTDEGVVRVRKSKGKYAYLLEST-- 746

  Fly   512 YAYVERYFTAQEICDLNEVLFRPEQLFY-THLHRNSTYKELFRLRFLRILETGVYRKQRSYWVHM 575
               :..|...::.||..:|....:...| ....:.|..:....|..|::.|.|:..|.::.|.:.
Zfish   747 ---MNEYIEQRKPCDTMKVGGNLDSKGYGVATPKGSALRNPVNLAVLKLNEQGLLDKLKNKWWYD 808

  Fly   576 KLHC-----VAQNFVITVGMEYVAPLLLMLICADILVVVILLVELAWK 618
            |..|     .:::....:.:..||.:..:||....|.:::.|||..:|
Zfish   809 KGECGSGGGDSKDKTSALSLSNVAGVFYILIGGLGLAMLVALVEFCYK 856

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ir75aNP_649012.2 Lig_chan 337..603 CDD:306551 64/321 (20%)
gria1bNP_991293.1 PBP1_iGluR_AMPA_GluR1 26..387 CDD:107385 32/194 (16%)
ANF_receptor 41..368 CDD:279440 29/175 (17%)
PBP2_iGluR_AMPA_GluR1 404..812 CDD:270447 90/440 (20%)
Lig_chan 536..842 CDD:278489 64/323 (20%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C170591198
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG1052
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR18966
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
43.840

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