DRSC/TRiP Functional Genomics Resources

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Protein Alignment Ir75a and GluRIIA

DIOPT Version :9

Sequence 1:NP_649012.2 Gene:Ir75a / 39982 FlyBaseID:FBgn0036757 Length:629 Species:Drosophila melanogaster
Sequence 2:NP_523484.2 Gene:GluRIIA / 33788 FlyBaseID:FBgn0004620 Length:907 Species:Drosophila melanogaster


Alignment Length:466 Identity:94/466 - (20%)
Similarity:187/466 - (40%) Gaps:105/466 - (22%)


- Green bases have known domain annotations that are detailed below.


  Fly   207 RVATVVT--QRPLTLSDDELIRFLSQENDTHIDSLARF-GFHLTLI--LRDLLHCKMKFIF---- 262
            :|.||||  :.|.         |:.:|:..:.....:: |:.:.||  |.:|:....:|:.    
  Fly   427 KVYTVVTHYEEPY---------FMMKEDHENFRGREKYEGYAVDLISKLSELMEFDYEFMIVNGN 482

  Fly   263 ------SDSWSKSDVVGGSVGAVVDQTADLTATPSLATEGR---LKYLSAIIETGFFRSVCIFRT 318
                  :..|.      |.:..::|..|.:.......|:.|   :.:....::.|.  |:..:::
  Fly   483 GKYNPETKQWD------GIIRKLIDHHAQIGVCDLTITQMRRSVVDFTVPFMQLGI--SILHYKS 539

  Fly   319 PHNAGLRGDVFLQPFSPLVW-YLFGGVLSLIGVLLWITFYMECKRMQKRW-----------RLDY 371
            |... .....||:||:..|| |:....|     ::.:.|....:...:.|           .|:.
  Fly   540 PPEP-KNQFAFLEPFAVEVWIYMIFAQL-----IMTLAFVFIARLSYREWLPPNPAIQDPDELEN 598

  Fly   372 LPSLLSTFLISFGAACIQSSSLIPRSAGGRLI-----YFALFLISFIMYNYYTSVVVSSLLSSPV 431
            :.::.::..:..|:...|...::||....|::     :|||.::|     .||:.:.:.|.|:..
  Fly   599 IWNVNNSTWLMVGSIMQQGCDILPRGPHMRILTGMWWFFALMMLS-----TYTANLAAFLTSNKW 658

  Fly   432 KSKIKTMRQLAESSLTVGLEPLPFTKSYLNYSRLPEIHLFIKRKIESQTQ---------NPELWL 487
            :|.||:::.|.|..           |.:....|.....||.....::..|         ||..:.
  Fly   659 QSSIKSLQDLIEQD-----------KVHFGSMRGGSTSLFFSESNDTDYQRAWNQMKDFNPSAFT 712

  Fly   488 PA-EQGVLRVR-DNPGYVYVFETSSGYAYVERYFTAQEICDLNEVLFRPEQLFYTH----LHRNS 546
            .. ::||.||| :..||.::.||:|....:||.      |||.::   .||:...|    :...|
  Fly   713 STNKEGVARVRKEKGGYAFLMETTSLTYNIERN------CDLTQI---GEQIGEKHYGLAVPLGS 768

  Fly   547 TYKELFRLRFLRILETGVYRKQRSYWVHMKLHCVAQNFVITVGMEYVAPL----LLMLICADILV 607
            .|:....:..|::.|.|..:|.::.|  .|.|.|..:....|..:.::.:    :.:::...:|:
  Fly   769 DYRTNLSVSILQLSERGELQKMKNKW--WKNHNVTCDSYHEVDGDELSIIELGGVFLVLAGGVLI 831

  Fly   608 VVIL-LVELAW 617
            .||| :.|..|
  Fly   832 GVILGIFEFLW 842

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ir75aNP_649012.2 Lig_chan 337..603 CDD:306551 61/301 (20%)
GluRIIANP_523484.2 PBP1_iGluR_Kainate 33..404 CDD:107377
ANF_receptor 46..386 CDD:279440
PBP2_iGluR_Kainate 426..796 CDD:270432 84/418 (20%)
Lig_chan 556..828 CDD:278489 61/303 (20%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45462585
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG1052
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - P PTHR18966
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
43.840

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