DRSC/TRiP Functional Genomics Resources

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Protein Alignment Ir75a and GluRIIC

DIOPT Version :9

Sequence 1:NP_649012.2 Gene:Ir75a / 39982 FlyBaseID:FBgn0036757 Length:629 Species:Drosophila melanogaster
Sequence 2:NP_608557.4 Gene:GluRIIC / 33275 FlyBaseID:FBgn0046113 Length:940 Species:Drosophila melanogaster


Alignment Length:664 Identity:135/664 - (20%)
Similarity:249/664 - (37%) Gaps:185/664 - (27%)


- Green bases have known domain annotations that are detailed below.


  Fly    44 IHPILVYHQFVQMRGVLNWSHLELSYMGHTQPTLAIYVDIKCDQTQDLLEEASREQIYNQHYHWL 108
            ||.::  |..:|: ...:|.:....|     |...:...|.|    |......|.....::...|
  Fly   306 IHDLI--HDALQL-FAQSWRNASFFY-----PDRMVVPRITC----DFAASGGRTWAMGRYLARL 358

  Fly   109 LVGNQ---------SKLEFYDLFG---LFNISIDADVSYVKEQIQDNNDSVAYAVHDVYNNGKII 161
            :.|..         |.|:| |..|   .|||           ::.|..|.:..|:.|  ..|:|.
  Fly   359 MKGTSGVNNTNFRTSILQF-DEDGQRITFNI-----------EVYDPLDGIGIAIWD--PRGQIT 409

  Fly   162 GGQLNVTGSHEMSCDPFVCRRTRHLSSLQKRSKYGNREQLTDVVLRVATVV---------TQRPL 217
              ||||.                  ...||:           ::.||||.:         |.|.|
  Fly   410 --QLNVD------------------VKAQKK-----------MIYRVATRIGPPYFSYNETAREL 443

  Fly   218 TLSDDELIRFLSQENDTHIDSLARFGFHLTLILRDLLHCKMKFIF----SDSWSKSDVV----GG 274
            .|:.:.|.:..:.:   .||::||             |...:::|    ...:.|.|..    .|
  Fly   444 NLTGNALYQGYAVD---LIDAIAR-------------HVGFEYVFVPVADQQYGKLDKETKQWNG 492

  Fly   275 SVGAVVDQTA-----DLTATPSLATEGRLKYLSAIIETGFFRSVCIFRTPHNAGLRGDVFLQPFS 334
            .:|.:::..|     |||.|.:..|  .:.:....::.|.  |:..:::|| .....|.:|.||.
  Fly   493 IIGEIINNDAHMGICDLTITQARKT--AVDFTVPFMQLGV--SILAYKSPH-VEKTLDAYLAPFG 552

  Fly   335 PLVWYLFGGVLSLIGVLLWITFYM---------------ECKR----MQKRWRLDYLPSLLSTFL 380
            ..||     :..||.|.: :||..               .|.|    ::.:||:.      :|..
  Fly   553 GEVW-----IWILISVFV-MTFLKTIVARISKMDWENPHPCNRDPEVLENQWRIH------NTGW 605

  Fly   381 ISFGAACIQSSSLIPRSAGGRLIYFALFLISFIMYNYYTSVVVSSLLSSPVKSKIKTMRQLAESS 445
            ::..:.......::|||...|:.....::.:.|:.|.||:.:.:.|.||.::..|..::.|:.. 
  Fly   606 LTVASIMTAGCDILPRSPQVRMFEATWWIFAIIIANSYTANLAAFLTSSKMEGSIANLKDLSAQ- 669

  Fly   446 LTVGLEPLPFTKSY--LNYSRLPEIHLFIKRKIESQTQNPELWLPAE------QGVLRVRDNPG- 501
                 :.:.|...|  ..|:.|.:.:..:.|...:...|.:   |:.      :||.|||.|.| 
  Fly   670 -----KKVKFGTIYGGSTYNLLADSNETVYRLAFNLMNNDD---PSAYTKDNLEGVDRVRKNRGD 726

  Fly   502 YVYVFETSSGYAYVERYFTAQEICDLNEVLFR-PEQLFYTHLHRNSTYKELFRLRFLRILETG-V 564
            |:::.||::    :|  :..::.|||..|..: .|:.:...:...:.|:....:..|::.|.| :
  Fly   727 YMFLMETTT----LE--YHREQNCDLRSVGEKFGEKHYAIAVPFGAEYRSNLSVAILKLSERGEL 785

  Fly   565 YRKQRSYWVHMKLHCVAQ---------NFVITVGMEYV--APLLLMLI--CADILVVV--ILLVE 614
            |..::.:|.:....|..:         .|....|:.|.  |.:|:..:  ..:.||.|  :.|.|
  Fly   786 YDLKQKWWKNPNASCFEEPDPDATPDMTFEELRGIFYTLYAGILIAFLIGITEFLVYVQQVALEE 850

  Fly   615 -LAWKRFFTRHLTF 627
             |.:|..|.:.:.|
  Fly   851 RLTFKDAFKKEIRF 864

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ir75aNP_649012.2 Lig_chan 337..603 CDD:306551 60/308 (19%)
GluRIICNP_608557.4 PBP1_iGluR_Kainate 26..404 CDD:107377 25/123 (20%)
Periplasmic_Binding_Protein_Type_1 <279..363 CDD:299141 13/68 (19%)
PBP2_iGluR_Kainate 423..794 CDD:270432 86/418 (21%)
Lig_chan 554..828 CDD:278489 59/300 (20%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45462591
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - P PTHR18966
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
32.940

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