DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Ir75a and Nmdar2

DIOPT Version :9

Sequence 1:NP_649012.2 Gene:Ir75a / 39982 FlyBaseID:FBgn0036757 Length:629 Species:Drosophila melanogaster
Sequence 2:NP_001014714.1 Gene:Nmdar2 / 31107 FlyBaseID:FBgn0053513 Length:1083 Species:Drosophila melanogaster


Alignment Length:657 Identity:126/657 - (19%)
Similarity:220/657 - (33%) Gaps:204/657 - (31%)


- Green bases have known domain annotations that are detailed below.


  Fly    50 YHQFVQMRGVLNWSHLELSYMGHTQPTLAIYVDIKCDQTQDLLEEASREQIYNQHYHWLLVG--- 111
            |.:.|.:.|.||..::|.:..|          |::   :.:|.....|....|::..|..:|   
  Fly   423 YLRNVSIEGDLNKPNIEFTADG----------DLR---SAELKIMNLRPSANNKNLVWEEIGVWK 474

  Fly   112 --NQSKLEFYDL----------------FGLFNISIDADVSYVKEQIQDNNDSVAYAVHDVYNNG 158
              ...||:..|:                |.| .|:...:..|:       |.|.|..|     :|
  Fly   475 SWETQKLDIRDIAWPGNSHAPPQGVPEKFHL-KITFLEEAPYI-------NLSPADPV-----SG 526

  Fly   159 KII---GGQLNVTGSHEMSCDPFVCRRTRHLSSLQKRSKYGNREQLTDVVLRVATVVTQRPLTLS 220
            |.:   |....|...|||:.|..|.:..|:.|..|..|.:                         
  Fly   527 KCLMDRGVLCRVAADHEMAADIDVGQAHRNESFYQCCSGF------------------------- 566

  Fly   221 DDELIRFLSQENDTHIDSLARF----GFHLTLI-LRDLLHCKMKFIFSDSWSKSDVVGGSVGAVV 280
                          .||.|.:|    ||...|: :.|   .|...:.:..|:      |.:..:|
  Fly   567 --------------CIDLLEKFAEELGFTYELVRVED---GKWGTLENGKWN------GLIADLV 608

  Fly   281 DQTADLTATPSLAT---EGRLKYLSAIIETGFFRSVCIFRTPHNAGLRGDVFLQPFSPLVWYLFG 342
            ::..|:..|..:..   |..:.:....:|||    :.|........:....||:||....|.|.|
  Fly   609 NRKTDMVLTSLMINTEREAVVDFSEPFMETG----IAIVVAKRTGIISPTAFLEPFDTASWMLVG 669

  Fly   343 -----GVLSLIGVLLWIT-------FYMECKRMQKRWRLDYLPSLLSTF----LISFGAACIQSS 391
                 ....:|.:..|::       .|::...:     ..|..||..|:    .:.|.||....|
  Fly   670 IVAIQAATFMIFLFEWLSPSGYDMKLYLQNTNV-----TPYRFSLFRTYWLVWAVLFQAAVHVDS 729

  Fly   392 SLIPRSAGGRLI--YFALFLISFIMYNYYTSVVVSSLLSSPVKSKIKTMRQLAES---------- 444
               ||....|.:  .:|||.:.|:.  .||:.:.:.:::   :.:......|.:|          
  Fly   730 ---PRGFTSRFMTNVWALFAVVFLA--IYTANLAAFMIT---REEFHEFSGLNDSRLVHPFSHKP 786

  Fly   445 SLTVGLEPLPFTKS----YLNYSRLPEIHLFIKRKIESQTQNPELWLPAEQGVLRVRDNPGYVYV 505
            |...|..|...|.|    |.|.     :|.::::..::...:         ||..|.:.....::
  Fly   787 SFKFGTIPYSHTDSTIHKYFNV-----MHNYMRQYNKTSVAD---------GVAAVLNGNLDSFI 837

  Fly   506 FETSSGYAYVERYFTAQ-EICDLNEVLFRPEQLFYT------HLHRNSTYKELFRLRFLRILETG 563
            ::.:     |..|..|| |.|.|..|     ..:|.      ...|||.|.::|..|.|.....|
  Fly   838 YDGT-----VLDYLVAQDEDCRLMTV-----GSWYAMTGYGLAFSRNSKYVQMFNKRLLEFRANG 892

  Fly   564 VYRKQRSYWV----------HMKLHCVAQNFVITVGMEYVAPLLLMLICADILVVVILLVELAWK 618
            ...:.|.||:          |.....:|        :|......|:|:...:|..::||:|..:.
  Fly   893 DLERLRRYWMTGTCRPGKQEHKSSDPLA--------LEQFLSAFLLLMAGILLAALLLLLEHVYF 949

  Fly   619 RFFTRHL 625
            ::..:.|
  Fly   950 KYIRKRL 956

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ir75aNP_649012.2 Lig_chan 337..603 CDD:306551 61/314 (19%)
Nmdar2NP_001014714.1 PBP1_iGluR_NMDA_NR2 99..490 CDD:107373 16/79 (20%)
PBP2_iGluR_NMDA_Nr2 502..908 CDD:270436 100/507 (20%)
Lig_chan 665..928 CDD:278489 59/307 (19%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45462783
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG1052
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - P PTHR18966
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
43.840

Return to query results.
Submit another query.