DRSC/TRiP Functional Genomics Resources

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Protein Alignment Ir75a and Gria3

DIOPT Version :9

Sequence 1:NP_649012.2 Gene:Ir75a / 39982 FlyBaseID:FBgn0036757 Length:629 Species:Drosophila melanogaster
Sequence 2:NP_001106213.1 Gene:Gria3 / 29628 RGDID:70958 Length:888 Species:Rattus norvegicus


Alignment Length:538 Identity:104/538 - (19%)
Similarity:207/538 - (38%) Gaps:88/538 - (16%)


- Green bases have known domain annotations that are detailed below.


  Fly   129 IDADVSYVKEQIQDNNDSVAYAVHDVYNNGKIIGGQLNVTGSHEM----SCDPFVCRRTRHLSSL 189
            ||.:.:....|:|....::.:..:....|..|...::.|:||.:.    ..:.||     ..|..
  Rat   346 IDIERALKMVQVQGMTGNIQFDTYGRRTNYTIDVYEMKVSGSRKAGYWNEYERFV-----PFSDQ 405

  Fly   190 QKRSKYGNREQLTDVVLRVATVVTQRPLTLSDDELIRFLSQENDTHIDSLARF-GFHLTLILRDL 253
            |..:...:.|..|.||    |.:.:.|..         :.::|...::...|: |:.:.|.....
  Rat   406 QISNDSSSSENRTIVV----TTILESPYV---------MYKKNHEQLEGNERYEGYCVDLAYEIA 457

  Fly   254 LHCKMKFIFSDSWSKSDVVG---------------GSVGAVVDQTADLTATP---SLATEGRLKY 300
            .|.::|:       |..:||               |.||.:|...||:...|   :|..|..:.:
  Rat   458 KHVRIKY-------KLSIVGDGKYGARDPETKIWNGMVGELVYGRADIAVAPLTITLVREEVIDF 515

  Fly   301 LSAIIETGFFRSVCIFRTPHNAGLRGDVFLQPFSPLVWYLFGGVLSLIGVLLWITFYMECKRMQK 365
            ....:..|.  |:.| :.|..:......||.|.:..:|...  |.:.|||.  :..::..:....
  Rat   516 SKPFMSLGI--SIMI-KKPQKSKPGVFSFLDPLAYEIWMCI--VFAYIGVS--VVLFLVSRFSPY 573

  Fly   366 RWRLD---------YLP-------SLLSTFLISFGAACIQSSSLIPRSAGGRLIYFALFLISFIM 414
            .|.|:         ..|       .:.::...|.||...|...:.|||..||::....:..:.|:
  Rat   574 EWHLEDNNEEPRDPQSPPDPPNEFGIFNSLWFSLGAFMQQGCDISPRSLSGRIVGGVWWFFTLII 638

  Fly   415 YNYYTSVVVSSLLSSPVKSKIKTMRQLA-ESSLTVGLEPLPFTKSYLNYSRLPEIHLFIKRKIES 478
            .:.||:.:.:.|....:.|.|::...|| ::.:..|......||.:...|:   |.::.|.....
  Rat   639 ISSYTANLAAFLTVERMVSPIESAEDLAKQTEIAYGTLDSGSTKEFFRRSK---IAVYEKMWSYM 700

  Fly   479 QTQNPELWL-PAEQGVLRVRDNPG-YVYVFETSSGYAYVERYFTAQEICDLNEVLFRPEQLFY-T 540
            ::..|.::. ....||.|||.:.| :.::.|::     :..|...::.||..:|....:...| .
  Rat   701 KSAEPSVFTKTTADGVARVRKSKGKFAFLLEST-----MNEYIEQRKPCDTMKVGGNLDSKGYGV 760

  Fly   541 HLHRNSTYKELFRLRFLRILETGVYRKQRSYWVHMKLHC-----VAQNFVITVGMEYVAPLLLML 600
            ...:.|.......|..|::.|.|:..|.::.|.:.|..|     .:::....:.:..||.:..:|
  Rat   761 ATPKGSALGNAVNLAVLKLNEQGLLDKLKNKWWYDKGECGSGGGDSKDKTSALSLSNVAGVFYIL 825

  Fly   601 ICADILVVVILLVELAWK 618
            :....|.:::.|:|..:|
  Rat   826 VGGLGLAMMVALIEFCYK 843

Known Domains:


Indicated by green bases in alignment.

Software error:

Illegal division by zero at /www/www.flyrnai.org/docroot/cgi-bin/DRSC_prot_align.pl line 591.

For help, please send mail to the webmaster (ritg@hms.harvard.edu), giving this error message and the time and date of the error.

GeneSequenceDomainRegion External IDIdentity
Ir75aNP_649012.2 Lig_chan 337..603 CDD:306551 56/290 (19%)
Gria3NP_001106213.1 PBP1_iGluR_AMPA_GluR3 29..400 CDD:107382 9/53 (17%)
ANF_receptor 40..383 CDD:279440 6/36 (17%)
PBP2_iGluR_AMPA 416..799 CDD:270433 82/417 (20%)
Glutamate binding 502..504 1/1 (100%)
Lig_chan 548..829 CDD:278489 56/292 (19%)