DRSC/TRiP Functional Genomics Resources

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Protein Alignment Ir75a and GRIA4

DIOPT Version :10

Sequence 1:NP_649012.2 Gene:Ir75a / 39982 FlyBaseID:FBgn0036757 Length:629 Species:Drosophila melanogaster
Sequence 2:NP_000820.4 Gene:GRIA4 / 2893 HGNCID:4574 Length:902 Species:Homo sapiens


Alignment Length:443 Identity:87/443 - (19%)
Similarity:182/443 - (41%) Gaps:53/443 - (11%)


- Green bases have known domain annotations that are detailed below.


  Fly   208 VATVVTQRPLTL--SDDELIRFLSQENDTH----IDSLARFGFHLTLILRDLLHCKMKFIFSDSW 266
            |.|.:.:.|..:  .:.|:.    :.||.:    :|..:....|:.:..:..:....|:...|:.
Human   418 VVTTIMESPYVMYKKNHEMF----EGNDKYEGYCVDLASEIAKHIGIKYKIAIVPDGKYGARDAD 478

  Fly   267 SKSDVVGGSVGAVVDQTADLTATP---SLATEGRLKYLSAIIETGFFRSVCIFRTPHNAGLRGDV 328
            :|  :..|.||.:|...|::...|   :|..|..:.:....:..|.  |:.| :.|..:......
Human   479 TK--IWNGMVGELVYGKAEIAIAPLTITLVREEVIDFSKPFMSLGI--SIMI-KKPQKSKPGVFS 538

  Fly   329 FLQPFSPLVWYLFGGVLSLIGVLLWITFYMECKRMQKRWRL-----------DYLPS---LLSTF 379
            ||.|.:..:|...  |.:.|||.  :..::..:.....|..           |..|:   :.::.
Human   539 FLDPLAYEIWMCI--VFAYIGVS--VVLFLVSRFSPYEWHTEEPEDGKEGPSDQPPNEFGIFNSL 599

  Fly   380 LISFGAACIQSSSLIPRSAGGRLIYFALFLISFIMYNYYTSVVVSSLLSSPVKSKIKTMRQLA-E 443
            ..|.||...|...:.|||..||::....:..:.|:.:.||:.:.:.|....:.|.|::...|| :
Human   600 WFSLGAFMQQGCDISPRSLSGRIVGGVWWFFTLIIISSYTANLAAFLTVERMVSPIESAEDLAKQ 664

  Fly   444 SSLTVGLEPLPFTKSYLNYSRLPEIHLFIKRKIESQTQNPELWL-PAEQGVLRVRDNPG-YVYVF 506
            :.:..|......||.:...|:   |.::.|.....::..|.::. ...:||.|||.:.| :.::.
Human   665 TEIAYGTLDSGSTKEFFRRSK---IAVYEKMWTYMRSAEPSVFTRTTAEGVARVRKSKGKFAFLL 726

  Fly   507 ETSSGYAYVERYFTAQEICDLNEVLFRPEQLFY-THLHRNSTYKELFRLRFLRILETGVYRKQRS 570
            |::     :..|...::.||..:|....:...| ....:.|:.:....|..|::.|.||..|.::
Human   727 EST-----MNEYIEQRKPCDTMKVGGNLDSKGYGVATPKGSSLRTPVNLAVLKLSEAGVLDKLKN 786

  Fly   571 YWVHMKLHC-----VAQNFVITVGMEYVAPLLLMLICADILVVVILLVELAWK 618
            .|.:.|..|     .:::....:.:..||.:..:|:....|.:::.|:|..:|
Human   787 KWWYDKGECGPKDSGSKDKTSALSLSNVAGVFYILVGGLGLAMLVALIEFCYK 839

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ir75aNP_649012.2 Periplasmic_Binding_Protein_Type_2 455..572 CDD:473866 25/119 (21%)
GRIA4NP_000820.4 PBP1_iGluR_AMPA_GluR4 28..400 CDD:380611
PBP2_iGluR_AMPA_GluR4 414..795 CDD:270445 79/397 (20%)
Blue background indicates that the domain is not in the aligned region.

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