DRSC/TRiP Functional Genomics Resources

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Protein Alignment Ir75a and Grik4

DIOPT Version :10

Sequence 1:NP_649012.2 Gene:Ir75a / 39982 FlyBaseID:FBgn0036757 Length:629 Species:Drosophila melanogaster
Sequence 2:NP_036704.1 Gene:Grik4 / 24406 RGDID:2734 Length:956 Species:Rattus norvegicus


Alignment Length:678 Identity:141/678 - (20%)
Similarity:250/678 - (36%) Gaps:174/678 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly    11 LDNLVQSRI---GFIVLFHCWQSDESLKFAQQFMKPIHPILVYHQFVQMRGVLNWSHLELSYMGH 72
            :|:||..|:   ||.:.      ::|..|.|:|.:.::.              :|.. ...::..
  Rat   255 MDSLVDDRVNILGFSIF------NQSHAFFQEFSQSLNQ--------------SWQE-NCDHVPF 298

  Fly    73 TQPTL-------AIYVDIKCDQTQDLLEE-------ASREQIYNQHYHWLLVGNQSKLEFYDLFG 123
            |.|.|       |:|..:...|..:..:|       ....||: ||...|:    :.|...:|.|
  Rat   299 TGPALSSALLFDAVYAVVTAVQELNRSQEIGVKPLSCGSAQIW-QHGTSLM----NYLRMVELEG 358

  Fly   124 LFNISIDADVSYVKEQIQDNNDSVAYAVHDVYNNGKIIGGQLNVTGSHEMSCDPFVCRRTRHLSS 188
            |        ..:::...:....:.|..:.....||....||.:|  :..:|.|      :|..:|
  Rat   359 L--------TGHIEFNSKGQRSNYALKILQFTRNGFRQIGQWHV--AEGLSMD------SRLYAS 407

  Fly   189 LQKRSKYGNREQLTDVVLRVATVVTQRPLTLSDDELIRFLSQENDTHIDSLARF-GF------HL 246
                       .::|.:.....|||    |:.::..:.......|  ::...|: ||      .|
  Rat   408 -----------NISDSLFNTTLVVT----TILENPYLMLKGNHQD--MEGNDRYEGFCVDMLKEL 455

  Fly   247 TLILRDLLHCKMKFIFSDSWSKSDVVG---GSVGAVVDQTADLTATPSLATEGRLKYLSAIIETG 308
            ..|||  .:.|::.:....:...:..|   |.||.::.:.|||.......|..|.|.:.  ....
  Rat   456 AEILR--FNYKIRLVGDGVYGVPEANGTWTGMVGELIARKADLAVAGLTITAEREKVID--FSKP 516

  Fly   309 FFR-SVCIFRTPHNAGLRGDV-FLQPFSPLVW------YL-FGGVLSLIGVLLWITFYMECKRMQ 364
            |.. .:.|....|.....|.. ||.||||.||      || ...||.|:..|....:|......|
  Rat   517 FMTLGISILYRVHMGRRPGYFSFLDPFSPGVWLFMLLAYLAVSCVLFLVARLTPYEWYSPHPCAQ 581

  Fly   365 KRWRL---DYLPSLLSTFLISFGAACIQSSSLIPRSAGGRLIYFALFLISFIMYNYYTSVVVSSL 426
            .|..|   .|  ||.::.....|....|.|::.||:...|.:....:..:.|:.:.||:.:.:.|
  Rat   582 GRCNLLVNQY--SLGNSLWFPVGGFMQQGSTIAPRALSTRCVSGVWWAFTLIIISSYTANLAAFL 644

  Fly   427 LSSPVKSKIKTMRQLAE------------SSLTVGLEPLPFTKS-YLNYSRLPEIHLFIKRKIES 478
            ....::..|:::..||:            ||:|.      |..| |..|.|:.. :::.|:    
  Rat   645 TVQRMEVPIESVDDLADQTAIEYGTIHGGSSMTF------FQNSRYQTYQRMWN-YMYSKQ---- 698

  Fly   479 QTQNPELWLPA-EQGVLRVRDNPGYVYVFETSSGYAYVERYFTAQEICDLNEV------------ 530
                |.:::.: |:|:.||. |..|.::.|::....|.:|.      |:|.::            
  Rat   699 ----PSVFVKSTEEGIARVL-NSNYAFLLESTMNEYYRQRN------CNLTQIGGLLDTKGYGIG 752

  Fly   531 -----LFRPE-QLFYTHLHRNSTYKELFRLRFLRILETGVYRKQRSYWVHMKLHCVAQNFVITVG 589
                 :||.| .|....|..|:      ||..|:          |.:|...|......:....:|
  Rat   753 MPVGSVFRDEFDLAILQLQENN------RLEILK----------RKWWEGGKCPKEEDHRAKGLG 801

  Fly   590 MEYVAPLLLMLICADILVVVILLVELAW 617
            ||.:..:.::|||..|:.:.:.::|..|
  Rat   802 MENIGGIFVVLICGLIVAIFMAMLEFLW 829

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ir75aNP_649012.2 Periplasmic_Binding_Protein_Type_2 455..572 CDD:473866 28/136 (21%)
Grik4NP_036704.1 Periplasmic_Binding_Protein_type1 24..402 CDD:471960 35/188 (19%)
PBP2_iGluR_kainate_KA1 415..785 CDD:270442 92/419 (22%)
QRL_CxxC_CxxC 863..927 CDD:469521
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 931..956
Blue background indicates that the domain is not in the aligned region.

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