DRSC/TRiP Functional Genomics Resources

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Protein Alignment Ir75a and Grin2b

DIOPT Version :9

Sequence 1:NP_649012.2 Gene:Ir75a / 39982 FlyBaseID:FBgn0036757 Length:629 Species:Drosophila melanogaster
Sequence 2:NP_001350679.1 Gene:Grin2b / 14812 MGIID:95821 Length:1482 Species:Mus musculus


Alignment Length:709 Identity:117/709 - (16%)
Similarity:230/709 - (32%) Gaps:245/709 - (34%)


- Green bases have known domain annotations that are detailed below.


  Fly    75 PTLAIYVDIKC--DQTQDLLEEASREQIYNQHYHW----LLVGNQSKLEFYDLFGLFNISID--- 130
            |.:.:|    |  ::...:.|.|:...:....|.|    |:.|:...:......||.::|.|   
Mouse   226 PIILLY----CTKEEATYIFEVANSVGLTGYGYTWIVPSLVAGDTDTVPSEFPTGLISVSYDEWD 286

  Fly   131 ----------------------ADVSYVKEQIQDNNDSVAYAVHD--VYNNGKIIGGQLNVT--G 169
                                  ::.|::.|.     .|..|..|:  :|.:..:....:|||  |
Mouse   287 YGLPARVRDGIAIITTAASDMLSEHSFIPEP-----KSSCYNTHEKRIYQSNMLNRYLINVTFEG 346

  Fly   170 SH-EMSCDPFVCRRTRHLSSLQKRSKYGNREQLTDVVLRVATVVTQRPLTLSDDELIRFLSQEND 233
            .: ..|.|.:.......:..|.|..|:....:..|..|::...|..|....:::       ||:|
Mouse   347 RNLSFSEDGYQMHPKLVIILLNKERKWERVGKWKDKSLQMKYYVWPRMCPETEE-------QEDD 404

  Fly   234 THIDSLARFGFHLTLI--------------------LRDLLHCKMKFIFSDSWSKSD-------- 270
                       ||:::                    :|:.:.|:.:.|   |.:|:|        
Mouse   405 -----------HLSIVTLEEAPFVIVESVDPLSGTCMRNTVPCQKRII---SENKTDEEPGYIKK 455

  Fly   271 -------------------------------------VVGGSVGAVVDQTADLTATPSLATEGR- 297
                                                 ...|.:|.||.:.|.:........|.| 
Mouse   456 CCKGFCIDILKKISKSVKFTYDLYLVTNGKHGKKINGTWNGMIGEVVMKRAYMAVGSLTINEERS 520

  Fly   298 --LKYLSAIIETGFFRSVCIFRTPHNAGLRGDVFLQPFSPLVWYLFGGVLSLIGVLLWITF---- 356
              :.:....||||.  ||.:.|:  |..:....||:|||..||.:...:|.::..:....|    
Mouse   521 EVVDFSVPFIETGI--SVMVSRS--NGTVSPSAFLEPFSADVWVMMFVMLLIVSAVAVFVFEYFS 581

  Fly   357 ---YMEC---------------KRMQKRWRLDYLPSLLSTFLISFGAACIQSSSLIPRSAGGRLI 403
               |..|               |.:...|.|.:..|:           .:|:    |:....:::
Mouse   582 PVGYNRCLADGREPGGPSFTIGKAIWLLWGLVFNNSV-----------PVQN----PKGTTSKIM 631

  Fly   404 --YFALFLISFIMYNYYTSVVVSSLLSSPVKSKI-----KTMRQLAESS--LTVGLEPLPFTKSY 459
              .:|.|.:.|:.  .||:.:.:.::......::     |..::..:.|  ...|..|...|:..
Mouse   632 VSVWAFFAVIFLA--SYTANLAAFMIQEEYVDQVSGLSDKKFQRPNDFSPPFRFGTVPNGSTERN 694

  Fly   460 L--NYSRLPEIHLFIKRKIESQTQNPELWLPA-------------------EQGVLRVRDNPGYV 503
            :  ||:   |:|.::.:..:....:..|.|..                   ::|...|....|.|
Mouse   695 IRNNYA---EMHAYMGKFNQRGVDDALLSLKTGKLDAFIYDAAVLNYMAGRDEGCKLVTIGSGKV 756

  Fly   504 YVFETSSGYAYVERYFTAQEICDLNEVLFRPEQLFYTHLHRNSTYKELFRLRFLRILETGVYRKQ 568
            :   .|:||...                          :.::|.:|....|..|::...|...:.
Mouse   757 F---ASTGYGIA--------------------------IQKDSGWKRQVDLAILQLFGDGEMEEL 792

  Fly   569 RSYWVHMKLHCVAQNFVIT--VGMEYVAPLLLMLICADILVVVILLVE-LAWKRFFTRH 624
            .:.|:....| ..:|.|::  :.::.:|.:..||..|..|.::..:.| |.:.:|  ||
Mouse   793 EALWLTGICH-NEKNEVMSSQLDIDNMAGVFYMLGAAMALSLITFICEHLFYWQF--RH 848

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ir75aNP_649012.2 Lig_chan 337..603 CDD:306551 47/319 (15%)
Grin2bNP_001350679.1 PBP1_iGluR_NMDA_NR2 33..388 CDD:380601 30/170 (18%)
PBP2_iGluR_NMDA_Nr2 403..803 CDD:270436 71/467 (15%)
NMDAR2_C 840..1482 CDD:402274 4/11 (36%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C167846329
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.930

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