DRSC/TRiP Functional Genomics Resources

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Protein Alignment Ir75a and Grin2a

DIOPT Version :9

Sequence 1:NP_649012.2 Gene:Ir75a / 39982 FlyBaseID:FBgn0036757 Length:629 Species:Drosophila melanogaster
Sequence 2:NP_032196.2 Gene:Grin2a / 14811 MGIID:95820 Length:1464 Species:Mus musculus


Alignment Length:674 Identity:119/674 - (17%)
Similarity:213/674 - (31%) Gaps:234/674 - (34%)


- Green bases have known domain annotations that are detailed below.


  Fly    39 QFMKPIHPILVYHQFVQMRGVLNWSHLELSYM--GH-TQPTLAIYVDIKCDQTQDLLEEASREQI 100
            |..||..|:...|||:..   :.|...:||:.  |: ..|.|.:.|                   
Mouse   323 QTEKPETPLHTLHQFMVN---VTWDGKDLSFTEEGYQVHPRLVVIV------------------- 365

  Fly   101 YNQHYHWLLVGNQSKLEFYDLFGLFNISIDADVSYVKEQIQDNNDSVAYAVHDVYNNGKIIGGQL 165
            .|:...|..||   |.|...|                        |:.:||...|.:..      
Mouse   366 LNKDREWEKVG---KWENQTL------------------------SLRHAVWPRYKSFS------ 397

  Fly   166 NVTGSHEMSCDPFVCRRTRHLSSLQKRSKYGNREQLTDVVLRVATVVTQRPLTLSDDELIR---- 226
                    .|:|    ...|||.               |.|..|..|....:....:..:|    
Mouse   398 --------DCEP----DDNHLSI---------------VTLEEAPFVIVEDIDPLTETCVRNTVP 435

  Fly   227 ---FLSQENDTH-------------IDSL------ARFGFHLTLILRDLLHCKMKFIFSDSWSKS 269
               |:...|.|:             ||.|      .:|.:.|.|:... .|.|         ..:
Mouse   436 CRKFVKINNSTNEGMNVKKCCKGFCIDILKKLSRTVKFTYDLYLVTNG-KHGK---------KVN 490

  Fly   270 DVVGGSVGAVVDQTADLTATPSLATEGR---LKYLSAIIETGFFRSVCIFRTPHNAGLRGDVFLQ 331
            :|..|.:|.||.|.|.:........|.|   :.:....:|||.  ||.:.|:  |..:....||:
Mouse   491 NVWNGMIGEVVYQRAVMAVGSLTINEERSEVVDFSVPFVETGI--SVMVSRS--NGTVSPSAFLE 551

  Fly   332 PFSPLVWYLFGGVLSLIGVLLWITF-YME---CKRMQKRWRLDYLPSL-------LSTFLISFGA 385
            |||..||.:...:|.::..:....| |..   ..|...:.:..:.||.       |...|:...:
Mouse   552 PFSASVWVMMFVMLLIVSAIAVFVFEYFSPVGYNRNLAKGKAPHGPSFTIGKAIWLLWGLVFNNS 616

  Fly   386 ACIQSSSLIPRSAGGRLI--YFALFLISFIMYNYYTSVVVSSLLSSPVKSKIKTMRQLAESSLTV 448
            ..:|:    |:....:::  .:|.|.:.|:.  .||:.:.:.::......::            .
Mouse   617 VPVQN----PKGTTSKIMVSVWAFFAVIFLA--SYTANLAAFMIQEEFVDQV------------T 663

  Fly   449 GLEPLPFTKSYLNYS-------------------RLPEIHLFI----KRKIES-----QTQNPEL 485
            ||....|.:.: :||                   ..|.:|.::    :|.:|.     :|...:.
Mouse   664 GLSDKKFQRPH-DYSPPFRFGTVPNGSTERNIRNNYPYMHQYMTKFNQRGVEDALVSLKTGKLDA 727

  Fly   486 WL----------PAEQGVLRVRDNPGYVYVFETSSGYAYVERYFTAQEICDLNEVLFRPEQLFYT 540
            ::          ..::|...|....||::   .::||...                         
Mouse   728 FIYDAAVLNYKAGRDEGCKLVTIGSGYIF---ATTGYGIA------------------------- 764

  Fly   541 HLHRNSTYKELFRLRFLRILETGVYRKQRSYWVHMKLHCVAQNFVIT--VGMEYVAPLLLMLICA 603
             |.:.|.:|....|..|:.:..|...:..:.|:....| ..:|.|::  :.::.:|.:..||..|
Mouse   765 -LQKGSPWKRQIDLALLQFVGDGEMEELETLWLTGICH-NEKNEVMSSQLDIDNMAGVFYMLAAA 827

  Fly   604 DILVVVILLVELAWKRFFTRHLTF 627
                :.:.|:...|:..|...|.|
Mouse   828 ----MALSLITFIWEHLFYWKLRF 847

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ir75aNP_649012.2 Lig_chan 337..603 CDD:306551 46/318 (14%)
Grin2aNP_032196.2 PBP1_iGluR_NMDA_NR2 32..392 CDD:107373 24/117 (21%)
PBP2_iGluR_NMDA_Nr2 403..802 CDD:270436 81/476 (17%)
HisJ <458..>541 CDD:223904 23/96 (24%)
Lig_chan 556..828 CDD:278489 47/324 (15%)
NMDAR2_C 839..1464 CDD:287527 3/9 (33%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C167846332
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.930

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