DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Ir75a and Gria2

DIOPT Version :9

Sequence 1:NP_649012.2 Gene:Ir75a / 39982 FlyBaseID:FBgn0036757 Length:629 Species:Drosophila melanogaster
Sequence 2:NP_001344853.2 Gene:Gria2 / 14800 MGIID:95809 Length:901 Species:Mus musculus


Alignment Length:641 Identity:125/641 - (19%)
Similarity:236/641 - (36%) Gaps:133/641 - (20%)


- Green bases have known domain annotations that are detailed below.


  Fly    47 ILVYHQFVQMRGVLNWSHL-ELSYMGHTQPTLAIYVDIKCDQTQDLLE----------EASR--- 97
            |:.|...:..:.:..||.| |..|.|....|:.....:..|..|.:.|          |.||   
Mouse   262 IVDYDDSLVSKFIERWSTLEEKEYPGAHTATIKYTSALTYDAVQVMTEAFRNLRKQRIEISRRGN 326

  Fly    98 --EQIYNQHYHWLLVGNQSKLEFYDLFGLFNISIDADVSYVKEQIQDNNDSVAYAVHDVYNNGKI 160
              :.:.|....|                  ...::.:.:..:.|::..:.::.:.     .|||.
Mouse   327 AGDCLANPAVPW------------------GQGVEIERALKQVQVEGLSGNIKFD-----QNGKR 368

  Fly   161 IGGQLNV-----TGSHEMSCDPFVCRRTRHLSSLQKRSKYGNREQLTDVVLRVATVVTQRPLTLS 220
            |...:|:     .|..::.....|.:....|:.|...:.....|..|.||    |.:.:.|..  
Mouse   369 INYTINIMELKTNGPRKIGYWSEVDKMVVTLTELPSGNDTSGLENKTVVV----TTILESPYV-- 427

  Fly   221 DDELIRFLSQENDTHIDSLARF-GFHLTLILRDLLHCKMKFIFSDSWSKSDVVG----------- 273
                   :.::|...::...|: |:.:.|......||..|:       |..:||           
Mouse   428 -------MMKKNHEMLEGNERYEGYCVDLAAEIAKHCGFKY-------KLTIVGDGKYGARDADT 478

  Fly   274 ----GSVGAVVDQTADLTATP---SLATEGRLKYLSAIIETGFFRSVCIFRTPHNAGLRGDVFLQ 331
                |.||.:|...||:...|   :|..|..:.:....:..|.  |:.| :.|..:......||.
Mouse   479 KIWNGMVGELVYGKADIAIAPLTITLVREEVIDFSKPFMSLGI--SIMI-KKPQKSKPGVFSFLD 540

  Fly   332 PFSPLVWYLFGGVLSLIGVLLWITFYMECKRMQKRWRLDYLP--------------SLLSTFLIS 382
            |.:..:|...  |.:.|||.  :..::..:.....|..:...              .:.::...|
Mouse   541 PLAYEIWMCI--VFAYIGVS--VVLFLVSRFSPYEWHTEEFEDGRETQSSESTNEFGIFNSLWFS 601

  Fly   383 FGAACIQSSSLIPRSAGGRLI-----YFALFLISFIMYNYYTSVVVSSLLSSPVKS--KIKTMRQ 440
            .||...|...:.|||..||::     :|.|.:||....|....:.|..:: ||::|  .:....:
Mouse   602 LGAFMQQGCDISPRSLSGRIVGGVWWFFTLIIISSYTANLAAFLTVERMV-SPIESAEDLSKQTE 665

  Fly   441 LAESSLTVGLEPLPFTKSYLNYSRLPEIHLFIKRKIESQTQNPELWL-PAEQGVLRVRDNPG-YV 503
            :|..:|..|     .||.:...|:   |.:|.|.....::..|.::: ...:||.|||.:.| |.
Mouse   666 IAYGTLDSG-----STKEFFRRSK---IAVFDKMWTYMRSAEPSVFVRTTAEGVARVRKSKGKYA 722

  Fly   504 YVFETSSGYAYVERYFTAQEICDLNEVLFRPEQLFY-THLHRNSTYKELFRLRFLRILETGVYRK 567
            |:.|::     :..|...::.||..:|....:...| ....:.|:.:....|..|::.|.||..|
Mouse   723 YLLEST-----MNEYIEQRKPCDTMKVGGNLDSKGYGIATPKGSSLRTPVNLAVLKLSEQGVLDK 782

  Fly   568 QRSYWVHMKLHCVAQNF-----VITVGMEYVAPLLLMLICADILVVVILLVELAWK 618
            .::.|.:.|..|.|::.     ...:.:..||.:..:|:....|.:::.|:|..:|
Mouse   783 LKNKWWYDKGECGAKDSGSKEKTSALSLSNVAGVFYILVGGLGLAMLVALIEFCYK 838

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ir75aNP_649012.2 Lig_chan 337..603 CDD:306551 62/294 (21%)
Gria2NP_001344853.2 PBP1_iGluR_AMPA_GluR2 28..398 CDD:380612 25/158 (16%)
PBP2_iGluR_AMPA 413..794 CDD:270433 88/421 (21%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C167846365
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG1052
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR18966
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
43.840

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