DRSC/TRiP Functional Genomics Resources

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Protein Alignment Ir75a and grin3b

DIOPT Version :9

Sequence 1:NP_649012.2 Gene:Ir75a / 39982 FlyBaseID:FBgn0036757 Length:629 Species:Drosophila melanogaster
Sequence 2:XP_017952374.2 Gene:grin3b / 100497172 XenbaseID:XB-GENE-990106 Length:1005 Species:Xenopus tropicalis


Alignment Length:802 Identity:147/802 - (18%)
Similarity:246/802 - (30%) Gaps:336/802 - (41%)


- Green bases have known domain annotations that are detailed below.


  Fly    22 IVLFHCWQS------------------------DES--LKFAQQFMK----PIHPILVY------ 50
            |:..|.|.|                        |||  :.|.||..:    |..|:|:|      
 Frog   176 IITCHPWDSASIQRYLTSNTTLVSRTILNIHPVDESALVPFLQQHFESMKNPQFPMLLYGCDARR 240

  Fly    51 ---------------HQFVQMRG-VLNWSHL---------------------------------E 66
                           |:|..|.| .||...:                                 .
 Frog   241 SSLVFRVARDCGLEAHEFHWMIGHPLNGEEMTTEGMPPGLLAYGEVSRPTMEKFIRDAVGLVTRA 305

  Fly    67 LSYMGHTQPTLAIYVD-IKCDQTQDLLEEASRE----------------QIY--------NQHYH 106
            :|...|.:|.||:... :.|:..|....|:|..                |||        ..||.
 Frog   306 ISAAVHVRPDLALIQSMVNCNDKQTKQNESSGSYLSRFLANTSFSGQTGQIYVSNNLIHTEHHYR 370

  Fly   107 -------------WLLVG--NQSKLEFYDLFGLFNISID----ADVSYVKEQIQDNNDSVAYAVH 152
                         |:.||  .|.|:|..:  ||:...|.    |...:.:.:::    .|....|
 Frog   371 IWSLVRDSLGDPTWVTVGGWRQGKMEVEE--GLWQSRIQQWEPAPGGFARTKLR----VVTLVEH 429

  Fly   153 ------DVYNNGKIIGGQLNVTGSHEMSCDPFVCRRTRHLSSL-----QKRSKYGNREQLTDVVL 206
                  :|..:|....||        |..||    ||.:.:.|     :..|..|:      |.|
 Frog   430 PFVFTREVDADGSCPAGQ--------MCLDP----RTNNSAVLDVLFEELNSPNGS------VPL 476

  Fly   207 RVATVVTQRPLTLSDDELIRFLSQENDTHIDSLARFGFHLTLILRDLLHCKMKFIFSDSWSKSDV 271
            ...|......:     :|:..||::        .||.|.| .|:.|..:...|   .|.|:    
 Frog   477 EYKTCCYGYCI-----DLLEKLSED--------LRFDFEL-YIVGDGKYGARK---GDRWT---- 520

  Fly   272 VGGSVGAVVDQTADLTATPSLATEGRLKYLSAIIE-TGFFRSV---CIFRTPHNAGLRGDVFLQP 332
              |.||.::...|.:..|.......|    |.:|: |..|.|.   .:.|....|...| .|:. 
 Frog   521 --GLVGDLLSGAAHMAVTSFSINSAR----STVIDFTSPFYSTSLGILVRMRDTASPIG-AFMW- 577

  Fly   333 FSPLVWYLFGGVLSLIGV-LLWITFYMECKRMQKRWR---------------LDYLPSLLSTFLI 381
              ||.|.::.|:...:.: .|::|||        .|:               ..|..:|...:.|
 Frog   578 --PLHWSMWVGIFVALHITALFLTFY--------EWKSPFGMTPHGRNRTKIFSYSSALNLCYAI 632

  Fly   382 SFGAACIQSSSLIPRSAGGRLIYFALFLISFIMYNYYTSVVVSSLLSSPVKSKIKTMRQLA---- 442
            .||...   ||..|:...||::.....:...::.:.||:.:.:.::..      ||...|:    
 Frog   633 LFGRTV---SSKTPKCCTGRVLMNLWAIFCLLVLSSYTANLAAVMVGD------KTFEALSGIHD 688

  Fly   443 ----------------ESSLTVGLEPLPFTKSYLNYSRLPEIHLFIKR-------------KIES 478
                            |||          .:.|:..| .||:|.::::             |.:.
 Frog   689 PKLHHPSQGFRFGTVWESS----------AEQYIKKS-FPEMHNYMRKFSVPATSDGVHLLKTDP 742

  Fly   479 QTQNP----------ELWLPAEQGVLRVRDNPGYVYVFE------------TSSGYAYVERYFTA 521
            .|.|.          |:.:.::..:|.:    |..:..|            ||:...::.||.::
 Frog   743 PTLNAFIMDKALLDYEVSIDSDCKLLTI----GKPFAIEGYGIGLPQNSPLTSNISEFISRYKSS 803

  Fly   522 QEICDLNEVLFR-----------PEQLFYTHLHRNSTYKELFRLRFL--------RILETGVY-- 565
            ..:..|::..::           .|.|.....|    :..||.|..:        .::|..||  
 Frog   804 GFMDTLHDKWYKMVPCGKRVYAVTETLQMGIYH----FSGLFVLLCIGFCGSLLTSLMERVVYHL 864

  Fly   566 -------RKQRSYWVH--MKLH 578
                   |::..||:|  .|:|
 Frog   865 ILPRIRRRRRFKYWLHTSQKIH 886

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ir75aNP_649012.2 Lig_chan 337..603 CDD:306551 57/343 (17%)
grin3bXP_017952374.2 PBP1_iGluR_NMDA_NR3 29..402 CDD:380600 41/227 (18%)
PBP2_iGluR_NMDA_Nr3 418..814 CDD:270438 88/480 (18%)
Lig_chan 582..848 CDD:395014 47/301 (16%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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