DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Ir75a and grin2b

DIOPT Version :9

Sequence 1:NP_649012.2 Gene:Ir75a / 39982 FlyBaseID:FBgn0036757 Length:629 Species:Drosophila melanogaster
Sequence 2:XP_017948700.2 Gene:grin2b / 100490580 XenbaseID:XB-GENE-949327 Length:1449 Species:Xenopus tropicalis


Alignment Length:669 Identity:118/669 - (17%)
Similarity:221/669 - (33%) Gaps:212/669 - (31%)


- Green bases have known domain annotations that are detailed below.


  Fly    27 CWQSDESLKFAQQFMKPIHPILVYHQFVQMRGVLNWSHLELSYMGHTQPTLAIYVDIKCDQTQDL 91
            |:...||..:....:|.      |...|...| .|.|..|..|..|  |.|.|.           
 Frog   316 CYNIQESRVYEAHMLKR------YLINVTFEG-RNLSFSEDGYQMH--PKLVII----------- 360

  Fly    92 LEEASREQIYNQHYHWLLVGNQS----KLEFY--DLFGLFNISIDADVSYVKEQIQDNNDSVA-- 148
                    :.||...|..||...    |:::|  .:|.|:..|         |:.:|.:.|:.  
 Frog   361 --------LLNQQRKWERVGKYKDRSLKMKYYVWPVFELYPNS---------EEHKDEHLSIVTL 408

  Fly   149 -----YAVHDVYNNGKIIGGQLNVTGSHEMSCDPFVCRRTRHLSSLQKRSKYGNREQ-------- 200
                 ..|.||                     ||......|:....:|:.:..||.:        
 Frog   409 EEAPFVIVEDV---------------------DPLSGTCMRNTVPCRKQIRTENRTEEGGNYIKR 452

  Fly   201 -----LTDVVLRVATVVTQRPLTLSDDELIRFLSQENDTHIDSLARFGFHLTLILRDLLHCKMKF 260
                 ..|::.::|..|                            :|.:.|.|:... .|.|.  
 Frog   453 CCKGFCIDILKKIAKTV----------------------------KFTYDLYLVTNG-KHGKK-- 486

  Fly   261 IFSDSWSKSDVVGGSVGAVVDQTADLTATPSLATEGR---LKYLSAIIETGFFRSVCIFRTPHNA 322
             .:.:|:      |.:|.||.:.|.:........|.|   :.:....||||.  ||.:.|:  |.
 Frog   487 -INGTWN------GMIGEVVTKRAYMAVGSLTINEERSEVVDFSVPFIETGI--SVMVSRS--NG 540

  Fly   323 GLRGDVFLQPFSPLVWYLFGGVLSLIGVLLWITF-------YMEC---------------KRMQK 365
            .:....||:|||..||.:...:|.::..:....|       |..|               |.:..
 Frog   541 TVSPSAFLEPFSADVWVMMFVMLLIVSAVAVFVFEYFSPVGYNRCLADGREPGGPSFTIGKAIWL 605

  Fly   366 RWRLDYLPSLLSTFLISFGAACIQSSSLIPRSAGGRLI--YFALFLISFIMYNYYTSVVVSSLLS 428
            .|.|.:..|:           .:|:    |:....:::  .:|.|.:.|:.  .||:.:.:.::.
 Frog   606 LWGLVFNNSV-----------PVQN----PKGTTSKIMVSVWAFFAVIFLA--SYTANLAAFMIQ 653

  Fly   429 SPVKSKIKTMRQLA-------ESSLTVGLEPLPFTKSYLNYSRLPEIHLFIKRKIESQTQNPELW 486
            .....::..:....       ..:...|..|...|:..:..:.| |:|.::.:..:...|:    
 Frog   654 EEYVDQVSGLSDKKFQRPNDFSPAFRFGTVPNGSTERNIRNNYL-EMHSYMVKFNQRSVQD---- 713

  Fly   487 LPAEQGVLRVRDNPGYVYVFETSSGYAYVERYFTAQ-EICDLNEVLFRPEQLFYT-----HLHRN 545
                 .:|.::......::::     |.|..|...: |.|.|  |.....::|.|     .:.::
 Frog   714 -----ALLSLKTGKLDAFIYD-----AAVLNYMAGRDEGCKL--VTIGSGKVFATTGYGIAIQKD 766

  Fly   546 STYKELFRLRFLRILETGVYRKQRSYWVHMKLHCVAQNFVIT--VGMEYVAPLLLMLICADILVV 608
            |.:|....|..|::...|...:..:.|:....| ..:|.|::  :.::.:|.:..||..|..|.:
 Frog   767 SGWKRQVDLAILQLFGDGEMEELEALWLTGICH-NEKNEVMSSQLDIDNMAGVFYMLAAAMALSL 830

  Fly   609 VILLVELAWKRFFTRHLTF 627
            :..::|         ||.|
 Frog   831 ITFIME---------HLFF 840

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ir75aNP_649012.2 Lig_chan 337..603 CDD:306551 46/304 (15%)
grin2bXP_017948700.2 PBP1_iGluR_NMDA_NR2 28..383 CDD:380601 21/94 (22%)
PBP2_iGluR_NMDA_Nr2 400..800 CDD:270436 81/497 (16%)
NMDAR2_C 837..1449 CDD:402274 3/4 (75%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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