DRSC/TRiP Functional Genomics Resources

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Protein Alignment Ir75a and grin3bb

DIOPT Version :9

Sequence 1:NP_649012.2 Gene:Ir75a / 39982 FlyBaseID:FBgn0036757 Length:629 Species:Drosophila melanogaster
Sequence 2:XP_017213803.2 Gene:grin3bb / 100333101 ZFINID:ZDB-GENE-131122-77 Length:1114 Species:Danio rerio


Alignment Length:827 Identity:149/827 - (18%)
Similarity:260/827 - (31%) Gaps:323/827 - (39%)


- Green bases have known domain annotations that are detailed below.


  Fly     3 LVQLANFVLDNLVQSRIGF----IVLFHCWQSD---ESLKFAQQF-MKPIHPILVYHQFVQMRGV 59
            ||:|...||     .|.|:    .||.|.|:..   :.||...:| ..|..    :|    :|..
Zfish   170 LVELLLAVL-----QRSGWEESMAVLCHGWEDAGLLDLLKLQGRFGWGPSQ----WH----LRAA 221

  Fly    60 LNWSH------------LELSYMGHTQP--TLAIYVDIKCDQTQDLLEEASREQIYNQHYHWLL- 109
            ||.||            .|...:.|:.|  .|....|.:|  ...:|..|....:.....||:: 
Zfish   222 LNLSHSTARMANISDFLSEHFNLDHSPPASVLLFGADPEC--ASSVLRSAHDLGLTLPTVHWIMG 284

  Fly   110 ----------VG-----------NQSKLEFY--DLFGLFNISIDA------DVSYVKEQIQ--DN 143
                      :|           :...|:||  |...|.|.::.|      |::.::..:.  |.
Zfish   285 HPLSPDALHSIGLPLGLLAYGEVDHKPLDFYISDALQLINRAVTAATVVRPDLALIQNMVNCFDK 349

  Fly   144 NDSVAYAVHDVYNNGKIIGGQLNVTGSHEMSCDPFVCRRTR---------HLSSLQK-------- 191
            .:.     |::.::|:.|...|:.|....:: .|.:.:|..         |:.||::        
Zfish   350 PNK-----HELPSSGQYIARFLSNTSFVGLT-GPVIVQRNLSRVHTSHKVHIWSLRRDAVGQPTW 408

  Fly   192 ---RSKYGNR----EQ----------------------------LTDVVLRVATVVTQRPLTLSD 221
               .|..|.|    ||                            ::...|||.|:| :.|...:.
Zfish   409 VTVGSWEGGRLNVEEQGLWQGSSPRQRTEGQMGREGRRWRAGFPVSGSRLRVVTLV-EHPFVFTR 472

  Fly   222 -------------------------DELIRFLSQENDTHID---SLARFGFHLTLILRDLLHCKM 258
                                     |.|....:|.|.:.:.   |...:|:.:.|:  :.|...|
Zfish   473 EVDEDGNCPAGQYCLDAGTNSSETLDHLYAERAQGNKSFLPPDYSKCCYGYCIDLL--EKLSEDM 535

  Fly   259 KFIFSDSWSKSD-----VVGGS----VGAVVDQTADLTATPSLATEGRLKYLSAIIETGFFRSV- 313
            .|.| |.:...|     |.||.    ||.::...||:..|.......|.|.:.  ..:.||.:. 
Zfish   536 NFEF-DLYIVGDGKYGAVKGGQWTGLVGDLLSGVADMAVTSFSINSARSKVID--FTSPFFSTSL 597

  Fly   314 -CIFRTPHNAGLRGDVFLQPFSPLVWYLFGGVLSLIGV-LLWITFYMECKRMQKRWR-------- 368
             .:.|:...|...| .|:.   ||.|.::.|:...:.: .|::|.|        .|:        
Zfish   598 GILVRSKDTAAPIG-AFMW---PLHWSMWMGIFVALHITALFLTLY--------EWKSPFGMTPH 650

  Fly   369 -------LDYLPSLLSTFLISFGAACIQSSSLIPRSAGGRLIYFALFLISFIMYNYYTSVVVSSL 426
                   ..|..:|...:.|.||...   ||..|:...||.:.....:...::.:.||:.:.:.:
Zfish   651 GRNRVKVFSYSSALNLCYAILFGRTV---SSKTPKCWTGRFLMNLWAIFCLLVLSSYTANLAAVM 712

  Fly   427 LSSPVKSKIKTMRQ--------------LAESSLTVGLEPLPFTKSYLNYSRLPEIHLFIKRKIE 477
            :......::..:..              :.|||          .:.|:..| .||:|.::::..|
Zfish   713 VGEKTFEEVSGIHDAKLHHPSQGFRFGTVRESS----------AEDYMKKS-FPEMHEYMRKFNE 766

  Fly   478 SQTQNPELWLPAEQGVLRVRDNPGYVYVF---------ETS----------------SGYA---- 513
            ..|.:         ||..::.:|..:..|         |.|                .||.    
Zfish   767 PTTPD---------GVATLKTDPPQLDAFIMDKALLDYEVSIDADCKLLTVGKPFAIEGYGIGLP 822

  Fly   514 -----------YVERYFT-----------------AQEICDLNEVLFRPEQLFYTHLHRNSTYKE 550
                       :|.||.:                 .:.:..:.|.|    |:...|      :..
Zfish   823 QNSPLTSNISEFVSRYKSDGYMDMLHDKWYKVVPCGKRVFAVTETL----QMGIRH------FSG 877

  Fly   551 LFRL----------------RFLRILETGVYRKQR-SYWVH--MKLH 578
            ||.|                .|.|::...:.|||: .||:|  .|:|
Zfish   878 LFVLLCVGVTGALLTLAGEHAFYRLVLPHIRRKQKFKYWLHTSQKIH 924

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ir75aNP_649012.2 Lig_chan 337..603 CDD:306551 56/348 (16%)
grin3bbXP_017213803.2 PBP1_iGluR_NMDA_NR3 29..428 CDD:107372 56/278 (20%)
PBP2_iGluR_NMDA_Nr3 457..852 CDD:270438 76/435 (17%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C170591229
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
21.840

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