DRSC/TRiP Functional Genomics Resources

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Protein Alignment Ir75a and gria3

DIOPT Version :9

Sequence 1:NP_649012.2 Gene:Ir75a / 39982 FlyBaseID:FBgn0036757 Length:629 Species:Drosophila melanogaster
Sequence 2:NP_001106494.1 Gene:gria3 / 100127683 XenbaseID:XB-GENE-1010483 Length:887 Species:Xenopus tropicalis


Alignment Length:538 Identity:104/538 - (19%)
Similarity:208/538 - (38%) Gaps:89/538 - (16%)


- Green bases have known domain annotations that are detailed below.


  Fly   129 IDADVSYVKEQIQDNNDSVAYAVHDVYNNGKIIGGQLNVT-GSHEMSC-DPFVCRRTRHLSSL-- 189
            ||.:.:....|:|....::.:   |.|      |.:.|.| ..:||:. .|   |:..|.:..  
 Frog   346 IDIERALKMVQVQGMTGNIQF---DTY------GRRTNYTIDVYEMTATKP---RKVGHWNEYER 398

  Fly   190 -------QKRSKYGNREQLTDVVLRVATVVTQRPLTL--SDDELIRFLSQENDTH----IDSLAR 241
                   |..::..:.|..|.:|    |.:.:.|..:  .:.||:    ..||.:    :|..:.
 Frog   399 FVPAPDQQPTNESSSVENKTIIV----TTILENPYVMKKKNHELL----DGNDKYEGYCVDLASE 455

  Fly   242 FGFHLTLILRDLLHCKMKFIFSDSWSKSD----VVGGSVGAVVDQTADLTATP---SLATEGRLK 299
            ...|:.      :..|:..:....:...|    :..|.||.:|...||:...|   :|..|..:.
 Frog   456 IAKHVG------IKYKLSIVEDGKYGARDPETKIWNGMVGELVYGRADIAVAPLTITLVREEVID 514

  Fly   300 YLSAIIETGFFRSVCIFRTPHNAGLRGDVFLQPFSPLVWYLFGGVLSLIGVLLWITFYMECKRMQ 364
            :....:..|.  |:.| :.|..:......||.|.:..:|...  |.:.|||.  :..::..:...
 Frog   515 FSKPFMSLGI--SIMI-KKPQKSKPGVFSFLDPLAYEIWMCI--VFAYIGVS--VVLFLVSRFSP 572

  Fly   365 KRWRLDYLP---------------SLLSTFLISFGAACIQSSSLIPRSAGGRLIYFALFLISFIM 414
            ..|.|:...               .:.::...|.||...|...:.|||..||::....:..:.|:
 Frog   573 YEWHLEDTDEARDPQNPPDPPNEFGIFNSLWFSLGAFMQQGCDISPRSLSGRIVGGVWWFFTLII 637

  Fly   415 YNYYTSVVVSSLLSSPVKSKIKTMRQLA-ESSLTVGLEPLPFTKSYLNYSRLPEIHLFIKRKIES 478
            .:.||:.:.:.|....:.|.|::...|| ::.:..|......||.:...|:   |.::.|.....
 Frog   638 ISSYTANLAAFLTVERMVSPIESAEDLAKQTEIAYGTLDSGSTKEFFRRSK---IAVYEKMWSYM 699

  Fly   479 QTQNPELWL-PAEQGVLRVRDNPG-YVYVFETSSGYAYVERYFTAQEICDLNEVLFRPEQLFY-T 540
            ::..|.::. ..:.||.|||.:.| :.::.|::     :..|...::.||..:|....:...| .
 Frog   700 KSAEPSVFTKTTDDGVARVRKSKGKFAFLLEST-----MNEYIEQRKPCDTMKVGGNLDSKGYGV 759

  Fly   541 HLHRNSTYKELFRLRFLRILETGVYRKQRSYWVHMKLHCVAQNF-----VITVGMEYVAPLLLML 600
            ...:.|.......|..|::.|.|:..|.::.|.:.|..|.|::.     ...:.:..||.:..:|
 Frog   760 ATPKGSALGTPVNLAVLKLSEQGILDKLKNKWWYDKGECGAKDSGSKDKTSALSLSNVAGVFYIL 824

  Fly   601 ICADILVVVILLVELAWK 618
            :....|.:::.|:|..:|
 Frog   825 VGGLGLAMMVALIEFCYK 842

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ir75aNP_649012.2 Lig_chan 337..603 CDD:306551 56/289 (19%)
gria3NP_001106494.1 Periplasmic_Binding_Protein_Type_1 29..400 CDD:324556 14/65 (22%)
PBP2_iGluR_AMPA 416..798 CDD:270433 79/410 (19%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR18966
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
11.100

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