DRSC/TRiP Functional Genomics Resources

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Protein Alignment Cln3 and cln3

DIOPT Version :9

Sequence 1:NP_001261999.1 Gene:Cln3 / 39981 FlyBaseID:FBgn0036756 Length:422 Species:Drosophila melanogaster
Sequence 2:NP_001007307.1 Gene:cln3 / 492340 ZFINID:ZDB-GENE-041114-174 Length:446 Species:Danio rerio


Alignment Length:445 Identity:182/445 - (40%)
Similarity:257/445 - (57%) Gaps:53/445 - (11%)


- Green bases have known domain annotations that are detailed below.


  Fly    19 VTPGDASRSSRQDR-GLWRDLTSYWILGLCNNYGYVVMLSAAHDII-KQFNPND----------- 70
            |..|.||.|..:.| ..||:..::|:||||||:.|||||||||||: ||.:.|.           
Zfish     5 VNSGTASTSDTEGRCQRWRNCVAFWLLGLCNNFAYVVMLSAAHDILQKQESQNTTAPSPAPNGTN 69

  Fly    71 ---ESEESSSGRNCHLVSTGAILLADVLPSLFVKILMPFF----PFWVNFRIALAVAFSAAGFLL 128
               .:..:||..:|:.|||.|:||||:||:|.:|:..||:    |:  .||:.:....:...||:
Zfish    70 IEFRNSSNSSRYDCNPVSTAAVLLADILPTLLIKLTAPFYIHKVPY--GFRVLVCFFTAVVSFLM 132

  Fly   129 VGFANAEWMALLGVIITSASSGIGETTFLAYSSRYNKNVISTWSSGTGGAGVIGSLSYASLRSLD 193
            |.|::...|:::|||..|.|||:||.:||:.|..::.:|:|.|.||||.|||.|:|.|::|....
Zfish   133 VSFSSTISMSIIGVIFASVSSGLGELSFLSLSVFFSSDVLSGWGSGTGAAGVAGALLYSALTQAG 197

  Fly   194 FSPRDTMLIMLIFPAIEAFAFWLLL---------RRPQVDIL----------------PVTTVES 233
            .:|:.|:.|||:.|.|.|.::::||         |.|:|...                ...|.|.
Zfish   198 LTPQVTLWIMLVVPVILAVSYFVLLVFPHSFPQWRCPEVSQSLSRGLNSEERRALIEEDTDTDED 262

  Fly   234 TEVLISDEK-----PLVGFKEKLFYIKHLFKYMLPLCLVYFFEYFINQGLFELVYFEDIFLDKDS 293
            :|..:.|:.     ||. |.||.:.||.|.|::.||.||||.||||||||.||:||.|..|....
Zfish   263 SEPALEDQDDKHIGPLT-FTEKKYIIKGLLKFIFPLALVYFAEYFINQGLMELLYFPDSRLSHAE 326

  Fly   294 QYRWLNVDYQIGVFISRSSVNLFQLDKIWLMSIFQFVNVVYFLTEVIWWYTPSIWIVFAIVLWEG 358
            ||||....||||||:||:|:..|::.||:|||:.|..|.|..:..|.:.:.|:|.:||.|:.:||
Zfish   327 QYRWYQTVYQIGVFVSRTSLFCFKIRKIFLMSLLQCANAVLLVFAVYYQFLPNISVVFVIIAFEG 391

  Fly   359 LLGGGAYVNTFYRMSKEISPERQQFAMAMVVQSDSYGIALAGFLAIPVHNAICGL 413
            ||||.||||||:.:.:|.....::||||.....||.|||.:...|.|||:..|.|
Zfish   392 LLGGAAYVNTFFFIREESVEREREFAMATATVGDSLGIAFSAAAAFPVHHYFCSL 446

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Cln3NP_001261999.1 CLN3 40..413 CDD:280623 173/421 (41%)
cln3NP_001007307.1 CLN3 27..446 CDD:280623 173/421 (41%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C170591978
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3880
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H37259
Inparanoid 1 1.050 309 1.000 Inparanoid score I2595
OMA 1 1.010 - - QHG54383
OrthoDB 1 1.010 - - D1037817at2759
OrthoFinder 1 1.000 - - FOG0004157
OrthoInspector 1 1.000 - - oto41284
orthoMCL 1 0.900 - - OOG6_102552
Panther 1 1.100 - - LDO PTHR10981
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R153
SonicParanoid 1 1.000 - - X2906
SwiftOrtho 1 1.000 - -
TreeFam 1 0.960 - -
ZFIN 00.000 Not matched by this tool.
1615.800

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