Protein Alignment Cln3 and cln-3.2

DIOPT Version :10

• Sequence 1: NP_649011.1
• Gene: Cln3 / 39981
• FlyBaseID: FBgn0036756
• Length: 422
• Species: Drosophila melanogaster
• Sequence 2: NP_491556.1
• Gene: cln-3.2 / 172171
• WormBaseID: WBGene00000540
• Length: 435
• Species: Caenorhabditis elegans
• Alignment Length: 426
• Identity: 172/426 - (40%)
• Similarity: 254/426 - (59%)
• Gaps: 51/426 - (11%)

  Fly    36 RDLTSYWILGLCNNYGYVVMLSAAHDIIKQFNPNDES--EESSSGRNCHLVSTGAILLADVLPSL 98
            |:..::|:||||||:.||||||||.||:::...:.|.  .|..:.|.|.::|||::||||::|:|
 Worm    13 RNSVAFWLLGLCNNFAYVVMLSAAKDILEKDAKHIEKPCREHVTTRECQMMSTGSVLLADIIPAL 77

  Fly    99 FVKILMPFF----PFWVNFRIALAVAFSAAGFLLVGFANAEWMALLGVIITSASSGIGETTFLAY 159
            .:||..|.|    ||.:  |.::.|...|:.||:||.:::..:||.||::.|..||:||.::||.
 Worm    78 LIKITAPMFIHRVPFGI--RHSIVVLLQASSFLIVGISDSTALALFGVVLASFGSGLGEISYLAL 140

  Fly   160 SSRYNKNVISTWSSGTGGAGVIGSLSYASL---RSLDFSPRDTMLIMLIFPAIEAFAFWLLLRRP 221
            ||.|...|:::|||||||||:||:.:||.|   :.|..||:.||.|||..||:.:.::|.:|:.|
 Worm   141 SSNYPSTVVASWSSGTGGAGLIGASAYALLTDSKLLAISPKHTMFIMLTLPALFSVSYWSILKIP 205

  Fly   222 QV----------------DILPVTTVESTEVLISDEKPLVGFKE-----------------KLFY 253
            ..                |.:|...:...||  .:|:.|:|.:|                 .|..
 Worm   206 HSVQRAHFLQPSTWLVTGDFIPADDMRREEV--EEEEGLLGIREDRENSVDVTSRRRQTSTTLER 268

  Fly   254 IKHLFKYMLPLCLVYFFEYFINQGLFELVYFE---DIFLDKDSQYRWLNVDYQIGVFISRSSVNL 315
            :..|.|:|:||..||..||:|||||.||:.|:   ...:..:|||||..|.||:||||||||.|.
 Worm   269 VLPLLKFMIPLISVYLAEYYINQGLLELLEFDCSHGFSMSSESQYRWFQVTYQLGVFISRSSSNY 333

  Fly   316 FQLDKIWL--MSIFQFVNVVYFLTEVIWWYTPSIWIVFAIVLWEGLLGGGAYVNTFYRMSKEISP 378
            ..:...:|  :::.|..|..:|....|:.:.|.|.|.|.::|:||||||.:|||||..:.|||..
 Worm   334 VTIPTQYLKSLAVLQIFNAGFFTITAIYSFLPHILIAFLVILFEGLLGGASYVNTFRAVHKEIPA 398

  Fly   379 ERQQFAMAMVVQSDSYGIALAGFLAIPVHNAICGLP 414
            :.::|:|.:|..||:.||..|||||:||||.||.:|
 Worm   399 DSREFSMGVVSISDTIGIVFAGFLAMPVHNRICSMP 434

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
Cln3	NP_649011.1	CLN3	39..413	CDD:460570	170/420 (40%)
cln-3.2	NP_491556.1	CLN3	16..433	CDD:460570	170/420 (40%)