Protein Alignment CG5589 and Gem3

DIOPT Version :9

• Sequence 1: NP_649009.1
• Gene: CG5589 / 39979
• FlyBaseID: FBgn0036754
• Length: 594
• Species: Drosophila melanogaster
• Sequence 2: NP_001261678.1
• Gene: Gem3 / 39195
• FlyBaseID: FBgn0011802
• Length: 1028
• Species: Drosophila melanogaster
• Alignment Length: 571
• Identity: 140/571 - (24%)
• Similarity: 236/571 - (41%)
• Gaps: 141/571 - (24%)

  Fly   111 PPPVDSFGTLTRDFKMLPRLQQNLLS----RNFDHPTPIQMQALPVLLQRRALMACAPTGSGKTL 171
            |..|.:|..|        ||.:|||:    .||..||.||..|:|:.|.:..|:..:.:|:||||
  Fly    21 PGQVKTFEEL--------RLYRNLLNGLKRNNFVTPTKIQAAAIPMALAKMDLIIQSKSGTGKTL 77

  Fly   172 AFLTPIINGLRAHKTTGLRALVLAPTRELAQQI----------YRE--CAELTRETGLRTHFISK 224
            .::..::.....: .....|:::.||||||.|:          :|:  |:.          ||..
  Fly    78 IYVIAVVQSFNPN-INQPHAMIVVPTRELAIQVQDTFFHLCKSFRDFKCSA----------FIGG 131

  Fly   225 VSEAK-QKHGAECKQRYDILVSTPNRVRFLLQQEPPLLDLSHVEWFVLDEADRLMEEGQNNFKEQ 288
            ...|| :|...|.:    :::.||.|:..|.:..  :.|:|.:...||||||:|.:  ..:.:..
  Fly   132 TDVAKDRKRMNESR----VIIGTPGRLLHLYENR--VFDVSKLRLLVLDEADQLYQ--TKSLQHT 188

  Fly   289 LDDIYAACSNPTKCVAFFSATYTVPVAKWALR------HLKNLVRITI--GV---------QNSA 336
            :..:..|.....:.:| .||||...:.:...:      .:.|..|.|:  |:         ||::
  Fly   189 VSKLIEAMPKNRQIIA-CSATYDQNLDERLAKVMDKPMLISNSERATVLLGIRQFVYELPQQNNS 252

  Fly   337 TETVQQELLFVGSEGGKLVAIRDLVRQGLQPPVLVFVQSKERAKQLFEELLYDGINVDVIHAERS 401
            .|.::.:|..:|          .:..|......::|..|:.||......|...||:..:|.....
  Fly   253 VEEMRLKLQILG----------QIFNQLPYEQAIIFASSQMRADSYKNYLTASGIDCHLISGAME 307

  Fly   402 QHQRDNCVKAFREGSIWVLICTELMGRGIDFKGVNLVINYDFPPTTISYIHRIGRTGRAGRPGRA 466
            |.:|.:..:.:|..::.:|:.|:||.||:|....|||||.|.|...::|:|||||.||.|..|.|
  Fly   308 QSERLHVFEGYRNFTMRILVATDLMARGVDSPHANLVINIDPPQDHVTYLHRIGRAGRFGSKGIA 372

  Fly   467 ITF-------------------------FTQEDTSN---------------------LRGIALII 485
            |||                         |.:|...|                     |:.:.:.|
  Fly   373 ITFIASKKESQRFREMSKKIATAWSVLEFPKEPMPNEFNFWDFEKYNFDYYIKEENPLQEMPMPI 437

  Fly   486 K--NSGGTVPEYMLQMKKVRKSEAKMRA---KKPLDREDISTKIR------PETKGDEKHKSTKL 539
            |  .|...|....:.::.::|.:...|.   |.|:..|::.|:..      ||:..:.|:...|.
  Fly   438 KENRSKENVDASSVDLENLQKDQDGKRRDPDKLPVALENVETQKELELENLPESSHNNKNLRVKE 502

  Fly   540 KKVERTEKILKNRKGYEKDLNSKQKKLGNIKTELKPAGKRKGNVEKKTKNK 590
            |::.|..|:        |:.||   |.|..||. |...::|.|...|.:.:
  Fly   503 KEIVRQGKL--------KETNS---KAGGSKTN-KTERRKKSNTPSKLQKQ 541

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
CG5589	NP_649009.1	SrmB	87..594	CDD:223587	140/571 (25%)
		P-loop_NTPase	123..329	CDD:304359	57/228 (25%)
		HELICc	349..469	CDD:238034	38/119 (32%)
Gem3	NP_001261678.1	SrmB	24..541	CDD:223587	139/566 (25%)
		P-loop_NTPase	27..228	CDD:304359	57/228 (25%)
		Helicase_C	259..367	CDD:278689	36/117 (31%)

Information from Original Tools

Tool	Simple Score	Weighted Score	Original Tool Information
			BLAST Result	Score	Score Type	Cluster ID
Compara	1	0.930	-	-		C45451714
Domainoid	0	0.000	Not matched by this tool.
eggNOG	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
Isobase	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	0	0.000	Not matched by this tool.
OrthoFinder	0	0.000	Not matched by this tool.
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	0	0.000	Not matched by this tool.
Panther	0	0.000	Not matched by this tool.
Phylome	1	0.910	-	-
RoundUp	0	0.000	Not matched by this tool.
SonicParanoid	0	0.000	Not matched by this tool.
	2	1.840