DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG5589 and mus301

DIOPT Version :9

Sequence 1:NP_649009.1 Gene:CG5589 / 39979 FlyBaseID:FBgn0036754 Length:594 Species:Drosophila melanogaster
Sequence 2:NP_648178.1 Gene:mus301 / 38905 FlyBaseID:FBgn0002899 Length:1051 Species:Drosophila melanogaster


Alignment Length:764 Identity:154/764 - (20%)
Similarity:265/764 - (34%) Gaps:216/764 - (28%)


- Green bases have known domain annotations that are detailed below.


  Fly    12 AGVRFTKKSKKEPSSKQQLQPLPE-----VSKHEEPVKSEE-SDK-------DDEDITEFR-LLD 62
            |...|.......|:|..:    |:     ..||:..:..|| :||       :|..|.|.. :..
  Fly    86 ADTSFPSAQSVPPNSASK----PDEASAPTDKHQIDLADEENADKLFKKINLNDLSIAEMEDIFH 146

  Fly    63 G-DSSNQP------------KRKKPK-KEKTLSP--------------------------KELEI 87
            | |..:.|            ..|||| .||.|:|                          :||:.
  Fly   147 GADDFSDPMVQNTQLFLDAMTFKKPKTPEKLLAPLKDDSMSFISKSVIEGLVQGTQYVTCEELKN 211

  Fly    88 QKAAEEAN-ETRKQYGIRVLGKNVPPPVDSFGTLTRDFKMLPRLQQNLLSR---NFDHPTPIQMQ 148
            |...:..| ||:   ......|| ...:|.|.:....:.:..::::.:|..   |..:....:..
  Fly   212 QSLLDPVNWETQ---AFADFEKN-NQDIDKFPSKGEFYGLPDKVKKMILEHKGINSLYEWQDECL 272

  Fly   149 ALPVLLQRRALMACAPTGSGKTLAFLTPIINGLRAHKTTGLRALVLAPTRELAQQIYRECAELTR 213
            .||.:.||:.|:...||..||||.....::..|...:.   ..|.:.|...:.|    |......
  Fly   273 NLPAIRQRKNLIYALPTSGGKTLVAEILMLRELLCRER---NVLFILPYVSIVQ----EKVSAMS 330

  Fly   214 ETGLRTHFISKVSEAKQKHGAEC-----KQRYDILVSTPNRVRFLLQQEPPLLDLS---HVEWFV 270
            ...:...||  |.|.....| :|     ::|..:.:::..:...|:..   |:|:.   .:...|
  Fly   331 PFAIDLDFI--VEEYTAGKG-KCPPQPRRKRRSLFIASIEKGAVLMDS---LIDVQRPHEIGLVV 389

  Fly   271 LDEADRLMEEGQN-------------NFKEQLDDIYAACSNPTKCVAFFSA-TYT---VPV-AKW 317
            :||...:.|:|:.             |...|:..:.|...|.::..:|.:| .||   .|| .|.
  Fly   390 VDELHLIGEKGRGATLEAFLTKVMFLNANIQIVGMSATIGNLSEISSFLNADVYTRGFRPVELKE 454

  Fly   318 ALRHLKNLVRITIGVQNSATETVQQELLFVGSEGGKLVAIRDLVR------QGL------QPPVL 370
            .::...:|:.|     |||.:|:::  :||.|...:......:.|      .||      :...|
  Fly   455 YIKCGPDLLEI-----NSAGQTLEE--IFVPSRSVEYNYSEAVKRADPDHLAGLISECAPEHCCL 512

  Fly   371 VFVQSKERAK-------------QLFEEL------LYD------GINVDVI-----------HAE 399
            ||..|::..:             :.||..      |.|      ||...|:           |:.
  Fly   513 VFCPSRKNCENVALLLSRIVPKHKFFEHRRSEKLDLMDALDKMCGILSPVLAKTLPYGIAYHHSG 577

  Fly   400 RSQHQRDNCVKAFREGSIWVLICTELMGRGIDFKGVNLVINYDFPP----TTISYIHRIGRTGRA 460
            .:..:|.....|:|.|.:.|:.||..:..|::.....::|...:..    |...|...:||.|||
  Fly   578 LTTDERKYIETAYRFGVVTVICCTSTLAAGVNLPAKRVIIRAPYVGQEFLTLCKYKQMVGRAGRA 642

  Fly   461 --GRPGRAITFFTQEDTSNL-----------RGIALIIKNSGGTVPEYMLQMKKVRKSEAKMRAK 512
              |..|.:|.....:|  ||           :.::.:.:|....:...:|.:..:..:|    .:
  Fly   643 GLGEAGESILIAQSKD--NLLVGQMLFSPMDKALSSLDQNEAVGLQSLILSVVGLNLAE----CR 701

  Fly   513 KPLDREDISTKIRPETKGDE---------------KHKSTKLKKVERTEKI------------LK 550
            :.|:|...||.:..:.|..|               |:|..:|.:.:...||            ..
  Fly   702 RDLNRLVNSTLLSVQAKSLEVAVNEIVLRILREMFKNKVLQLAEPQAKSKINSSDIITSQDVSQA 766

  Fly   551 NRKGYEKDL---NSKQKKLGNIKTELKPAG---KRKGNVEKKTKNKNNQ 593
            ||...::.|   .|...||.||......||   ||...:.|:.|....|
  Fly   767 NRPAGDRRLLIGQSTPFKLTNIGRAAFKAGIDYKRANAIHKELKQAQQQ 815

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG5589NP_649009.1 SrmB 87..594 CDD:223587 127/635 (20%)
P-loop_NTPase 123..329 CDD:304359 45/234 (19%)
HELICc 349..469 CDD:238034 35/173 (20%)
mus301NP_648178.1 BRR2 247..998 CDD:224125 119/595 (20%)
DEXHc_POLQ-like 247..449 CDD:350784 41/214 (19%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - P PTHR24031
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
11.100

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