DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG42816 and ABCA5

DIOPT Version :9

Sequence 1:NP_730301.3 Gene:CG42816 / 39977 FlyBaseID:FBgn0261998 Length:1459 Species:Drosophila melanogaster
Sequence 2:NP_001326002.1 Gene:ABCA5 / 823930 AraportID:AT3G47760 Length:936 Species:Arabidopsis thaliana


Alignment Length:690 Identity:176/690 - (25%)
Similarity:308/690 - (44%) Gaps:157/690 - (22%)


- Green bases have known domain annotations that are detailed below.


  Fly    33 EFNKTQG-DIKFPPIKDLPSPPI-FKSDNSSTLQDVGIMIIVIIIFFVVVSLTKSIVEEKELQLK 95
            ||.:..| .:.|..:|::|.... .:.:.:|.:..:....:::::|.|:::   |:|.||:..|:
plant   311 EFLQGSGTKMLFDFVKEMPKQETRLRLEMASLIGPIFFTWVILLLFPVMLT---SLVYEKQQHLR 372

  Fly    96 VTLNLMGVGSCLQWV---AWYIQTFIIFLI-----GSSIITLFWKLVLPNSEISFMPFTHWSMAL 152
            :.:.:.|:|....|:   |:::...|:::|     ||:|            .:.|..|..:|:..
plant   373 IIMKMHGLGDGPYWMITYAYFLAISIVYIICLMIFGSAI------------GLKFFRFNDYSIQF 425

  Fly   153 FVLLVLSHCTICFSFLMSSLISTTYRISLVTFLALIATYLPFLILHSKGCSEGLNVFLSLFLLSG 217
            ....:..:..|..:||:||..|.....|:..:|.:..:.|             |..||..|||.|
plant   426 IFYFLCINLQISIAFLVSSAFSKIETASVAAYLYVFGSGL-------------LGAFLFQFLLEG 477

  Fly   218 LQV---------------LVVGICMWEDY--------GEGLQWGNLFETSWPGGTLSVGYILLVM 259
            |..               |..|:..:..|        ..|::|.:..::       ::..|..::
plant   478 LSFPRSWIYIMELYPGFSLYRGLYEFSQYAFKRNLNGSGGMKWKDFNDS-------AMEEIFYII 535

  Fly   260 ILASFLSLLLCLYLEKI-------------------RPGPYGVPQPWHFPCTRCCSTESLLPYSR 305
            |:..|::|:...|.:||                   .|.|||:.:.                   
plant   536 IVEWFVALIAAYYTDKISSSGIDPFFFLKNQNPFKKSPSPYGLQRQ------------------- 581

  Fly   306 LFNRIFGIYSAAPDEERPDLQ----LIEPDPVDKIAG--VQIRGLSKTF-------GKMEVVKNV 357
                   :.:.|.:.|:.|:.    .:|...::...|  :....|.|.:       .|| .|:.:
plant   582 -------VSAIAIEMEKLDVAHERVKVEQLMLETSTGHAIVCDNLKKVYPCRDGNPQKM-AVRGL 638

  Fly   358 SFDMFEGQITVLMGHNGAGKTTLISMLAGFISPTSGTALINGFDIRQERRQAQRCIGLCPQQNVL 422
            |..:..|:...::|.||||||:.|:|:.|.:.||||.|.::|.||.::.......||:|||.::|
plant   639 SLAVPSGECFGMLGPNGAGKTSFINMMTGLMKPTSGAAFVHGLDICKDMDIVYTSIGVCPQHDLL 703

  Fly   423 FKHLSSVSHIQLFSRLRGLRGAEVKSEVQNYLKKLNL-----QEKKRLAARNLSGGTQRRLSVAC 482
            ::.|:...|:..:.||:.|:|:::...|:..||.:||     .:|   .|...|||.:||||||.
plant   704 WETLTGREHLLFYGRLKNLKGSDLDQAVEESLKSVNLFRGGVADK---PAGKYSGGMKRRLSVAI 765

  Fly   483 SLCGGVKVLICDEPSTGLDPSARRELWRLILEAKEGCTILLTTHQLDDGEVLGDRVVIISDGQLR 547
            ||.|..||:..|||||||||::||.||..|..||....|:||||.:::.|.|.||:.|..||:|:
plant   766 SLIGSPKVVYMDEPSTGLDPASRRSLWTAIKRAKNHTAIILTTHSMEEAEFLCDRLGIFVDGRLQ 830

  Fly   548 CIGSLPFLKKQVDASCLIT----CEARKRCDLEKLTSLIS------RHVGTIQPFSIKGRDVCYK 602
            |:|:...||.:...|.::|    .|..|  |:|.|...:|      .|:...|.|.|...:|   
plant   831 CVGNPKELKARYGGSYVLTMTTPSEHEK--DVEMLVQDVSPNAKKIYHIAGTQKFEIPKEEV--- 890

  Fly   603 LPLSKSKYFSSLFRDLESQMNILGVRGFSLSSVSLEEIFM 642
                   ..|.:|:.:|...:...|..:.|:..:||::|:
plant   891 -------RISEVFQAVEKAKDNFRVFAWGLADTTLEDVFI 923

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG42816NP_730301.3 CcmA 336..643 CDD:224054 113/331 (34%)
ABC_subfamily_A 339..556 CDD:213230 89/228 (39%)
ABC2_membrane_3 <821..1018 CDD:289468
CcmA 1135..1450 CDD:224054
ABC_subfamily_A 1136..1354 CDD:213230
ABCA5NP_001326002.1 None
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E2759_KOG0059
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D131191at2759
OrthoFinder 1 1.000 - - FOG0000051
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 1 0.900 - - OOG6_100045
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
65.720

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