DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG42816 and ABCA2

DIOPT Version :9

Sequence 1:NP_730301.3 Gene:CG42816 / 39977 FlyBaseID:FBgn0261998 Length:1459 Species:Drosophila melanogaster
Sequence 2:NP_190357.2 Gene:ABCA2 / 823927 AraportID:AT3G47730 Length:983 Species:Arabidopsis thaliana


Alignment Length:697 Identity:193/697 - (27%)
Similarity:310/697 - (44%) Gaps:115/697 - (16%)


- Green bases have known domain annotations that are detailed below.


  Fly    39 GDIKFPPI---KDLPSPPIFKSDNSSTLQDVGIMIIVIIIFFVVVSLTKSIVEEKELQLKVTLNL 100
            ||..|..:   |:.|.|.|   :....|..:|....:.:..|..|....|::.||||:|:..:.:
plant   200 GDPNFNWVVGFKEFPHPTI---EAIVALDTIGPTFFLAVAMFGFVLQISSLITEKELKLRQAMTM 261

  Fly   101 MGVGSCLQWVAWYIQTFIIFLIGSSIITLFWKLVLPNSEISFMPFTHWSMALFVLLVLSHCTICF 165
            |||.....|::|.....|:..|.:.:..||..:.    :..|.....:.:...:.::.....|..
plant   262 MGVFDTAYWLSWLTWEGILTAISALLTVLFGMMF----QFDFFLKNSFPVVFLLFMLFQFNLIGL 322

  Fly   166 SFLMSSLIS-----TT--YRISLVTFLALIATYLPFLILHSKGCSEGLNVFLSLF----LLSGLQ 219
            :|::|:.||     ||  :.:.||.|:..:||...|  .::|..|..:....|||    ...||:
plant   323 AFMLSAFISKSTSATTVGFFVFLVGFVTQLATSSGF--PYAKKYSRMIRALWSLFPPNTFSQGLK 385

  Fly   220 VLVVGICMWEDYGEGLQWGNLFETSWP----GGTLSVGYILLVMILASFLSLLLCLYLEKIRPGP 280
            :|.......:|  .|:.|....|.. |    |..|::..|.|.::...||..:|.||.:.|.|..
plant   386 LLADATSTPQD--PGISWSKRAECG-PNDDTGCVLTINDIYLWLLGTFFLWFVLALYFDNITPNA 447

  Fly   281 YGV---------PQPWHFPCTR-----------CCSTESLLPYSRLFNRIFGIYSAAPDEERPDL 325
            .||         |..|    |.           |....|:.|...:          .||:|    
plant   448 SGVRKSIFYFLKPGYW----TGKGGNRVEEGGICSCIGSVPPVDHI----------TPDDE---- 494

  Fly   326 QLIEPDP----------VDKIAGVQIRGLSKT------FGKMEVVKNVSFDMFEG--------QI 366
            .::|.:.          ||....||||||:||      ||..:..|...|...:|        |:
plant   495 DVLEEETLVKQHSMEGLVDPNVAVQIRGLAKTYPGTTKFGCCKCKKTSPFHALKGLWMNIAKDQL 559

  Fly   367 TVLMGHNGAGKTTLISMLAGFISPTSGTALINGFDIRQE--RRQAQRCIGLCPQQNVLFKHLSSV 429
            ..|:|.|||||||.|:.|.|....|.|.|||.|..||..  ....::.||:|||.::|:..||..
plant   560 FCLLGPNGAGKTTTINCLTGLFPVTGGDALIYGNSIRSSVGMSNIRKMIGVCPQFDILWDALSGE 624

  Fly   430 SHIQLFSRLRGLRGAEVKSEVQNYLKKLNLQEKKRLAARNLSGGTQRRLSVACSLCGGVKVLICD 494
            .|::||:.::||..:.:.|.|:..|.::.|.|..::.|.:.|||.:||||||.||.|..|::..|
plant   625 EHLKLFASIKGLPPSSINSMVEKSLAEVKLTEAGKIRAGSYSGGMKRRLSVAVSLIGDPKLVFLD 689

  Fly   495 EPSTGLDPSARRELWRLILEAKEGCTILLTTHQLDDGEVLGDRVVIISDGQLRCIGSLPFLKKQV 559
            ||:||:||..||.:|.:|.|.|:|..|:||||.:::.::|.||:.|::.|:|||||:...||.:.
plant   690 EPTTGMDPITRRHVWDIIQETKKGRAIILTTHSMEEADILSDRIGIMAKGRLRCIGTSIRLKSRF 754

  Fly   560 DASCLIT--------------CEARKRCDLEKLTSLISRHVGTIQPFSIKGRDVCYKLPLSKSKY 610
            ....:..              .::|     |.:......|: .::|.......:.:.:|..|...
plant   755 GTGFIANISFVESNNHNGEAGSDSR-----EPVKKFFKDHL-KVKPIEENKAFMTFVIPHDKENL 813

  Fly   611 FSSLFRDLESQMNILGVRGFSLSSVSLEEIFMSFGAE-DLNSRQSGG 656
            .:|.|.:|:.:....|:....|...:|||:|::...: :|.|....|
plant   814 LTSFFAELQDREEEFGISDIQLGLATLEEVFLNIARKAELESAAVDG 860

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG42816NP_730301.3 CcmA 336..643 CDD:224054 112/336 (33%)
ABC_subfamily_A 339..556 CDD:213230 95/232 (41%)
ABC2_membrane_3 <821..1018 CDD:289468
CcmA 1135..1450 CDD:224054
ABC_subfamily_A 1136..1354 CDD:213230
ABCA2NP_190357.2 rim_protein <186..>861 CDD:130324 193/697 (28%)
ABC_subfamily_A 518..751 CDD:213230 95/232 (41%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 1 1.000 99 1.000 Domainoid score I2373
eggNOG 1 0.900 - - E2759_KOG0059
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D131191at2759
OrthoFinder 1 1.000 - - FOG0000051
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 1 0.900 - - OOG6_100045
Panther 1 1.100 - - O PTHR19229
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
87.820

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