DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG42816 and abca4b

DIOPT Version :10

Sequence 1:NP_730301.3 Gene:CG42816 / 39977 FlyBaseID:FBgn0261998 Length:1459 Species:Drosophila melanogaster
Sequence 2:XP_021322694.1 Gene:abca4b / 555506 ZFINID:ZDB-GENE-050517-4 Length:2327 Species:Danio rerio


Alignment Length:1721 Identity:452/1721 - (26%)
Similarity:760/1721 - (44%) Gaps:375/1721 - (21%)


- Green bases have known domain annotations that are detailed below.


  Fly    46 IKDLPSPPIFKSDNSSTLQDVGIMIIVIIIFFVVVSLTKSIVEEKELQLKVTLNLMGVGSCLQWV 110
            ::.:|.|.........||.....:.:|:...:.|..:.||||.|||::||.||..|||.:.:.|.
Zfish   634 LQQMPYPCYVDDMFMLTLNRCFPIFMVLAWIYSVSMVVKSIVLEKEMRLKETLKAMGVSNGVIWY 698

  Fly   111 AWYIQTFIIFLIGSSIITLFWKLVLPNSEISFMPFTHWSMALFV-LLVLSHCTICFSFLMSSLIS 174
            .|:|.:||:....::::|   .:|:....:::..    .:.||: ||..:..||...||||...:
Zfish   699 TWFIDSFIMMTASTALLT---GIVMAGKVLNYSN----PIILFLFLLTFTVATIMQCFLMSVFFN 756

  Fly   175 TTYRISLVTFLALIATYLPFLILHSKGCSEGLNVFLSLFLLS------GLQVLVVGICMWEDYGE 233
            .....:..:.:.....|||.:...:.......::.|::.|||      |.:.|    ..:|:.|.
Zfish   757 KANLAAACSGIIYFTLYLPHIFCFAWQDRITKDMKLAVSLLSPVAFGFGTEYL----SRYEEQGL 817

  Fly   234 GLQWGNLFETSWPGGTLSVGYILLVMILASFLSLLLCLYLEKIRPGPYGVPQPWHFPCTRC---- 294
            ||||.|:..:...|...|....:.:|:|.:.|..:|..||:.:.||.||:.:|::||....    
Zfish   818 GLQWDNIGTSPLEGDEYSFFTSIRMMLLDAVLYGVLAWYLDNVFPGQYGIGRPFYFPLQSSYWLK 882

  Fly   295 ----CSTESLLPYSRLFNRI-------FGIYSAAPD----------------------------E 320
                ..|.:.:|...|.|.:       :|  ..:|:                            |
Zfish   883 PSPPSETSNAVPEKPLENHVEKQEDVEYG--GLSPEHRECNGSRNSKHCKHKEKRERMEKERERE 945

  Fly   321 ERPDLQ----------------LIEPDPVDKIAGVQIRGLSKTFGKME--VVKNVSFDMFEGQIT 367
            |:..:|                ..||:|...:.||.::.|.|.:.:..  .|..::.:.:|.|||
Zfish   946 EQLKMQEEIQQEEIQQWYCENPFFEPEPESLLIGVSVQDLVKMYNRYSRPAVDCLNMNFYESQIT 1010

  Fly   368 VLMGHNGAGKTTLISMLAGFISPTSGTALINGFDIRQERRQAQRCIGLCPQQNVLFKHLSSVSHI 432
            ..:|||||||||.:|:|.|...||||||.|.|.|||.|....::.:|:|||.|:|||||:...||
Zfish  1011 SFLGHNGAGKTTTLSILTGLFPPTSGTAYIYGRDIRTEMDAIRQSLGMCPQHNILFKHLTVEEHI 1075

  Fly   433 QLFSRLRGLRGAEVKSEVQNYLKKLNLQEKKRLAARNLSGGTQRRLSVACSLCGGVKVLICDEPS 497
            ..:|.::|....|.:.||:|.|:.|.|..|:...|:|||||.||:||||.:..||.:|:|.|||:
Zfish  1076 LFYSLMKGREHKEAEQEVENMLEDLGLPHKRDEEAQNLSGGMQRKLSVAMAFVGGSRVVILDEPT 1140

  Fly   498 TGLDPSARRELWRLILEAKEGCTILLTTHQLDDGEVLGDRVVIISDGQLRCIGSLPFLKKQVDAS 562
            :|:||.:||.:|.|:|:.:.|.|::|:||.:|:.::|.|||.|||.|:|.|.||..|||......
Zfish  1141 SGVDPYSRRSIWDLLLKYRTGRTVILSTHHMDEADLLSDRVAIISKGKLHCSGSPLFLKNCFGVG 1205

  Fly   563 CLIT--------------CEARKRC-------------------------DLEKLTSLISRHVGT 588
            ..:|              |:....|                         ::|.:|:||..||..
Zfish  1206 FYLTLVRRMKDQRKKENECDCASECSCTCSTCTRYKEESQALQPERVLDGNVESITTLIHHHVPE 1270

  Fly   589 IQPFSIKGRDVCYKLPLSKSKY--FSSLFRDLESQMNILGVRGFSLSSVSLEEIFMSFGAED--- 648
            .:...:.|:::.|.||....||  ::||||:||..:..:|:..|.:|..||||||:...|:.   
Zfish  1271 AKLIEMIGQEMTYLLPNKGFKYRAYASLFRELEETLGDMGLSSFGISDTSLEEIFLKVTADGEAA 1335

  Fly   649 ----------LNSRQSGGAEKRDDDDRDDDE------ENEVQDGNV-RSCK------KQWRAMMT 690
                      |..|::|....:|....:|..      |::..:|.. |..|      ||:.|::.
Zfish  1336 NSSVTPEQWMLQQRKNGNGFMKDTGLAEDANGVGASLESDSSEGRASRQVKGFSLVLKQFHALLV 1400

  Fly   691 KK----------------------VMALYDNKVY-----FLLLLLTPIVY--------------- 713
            |:                      ::||....:.     :..|.|||.:|               
Zfish  1401 KRFHHATRSHKDFLAQIVLPASFVLIALVFTMIVPPFGEYPCLTLTPWMYGPQFTFISNEQPSHP 1465

  Fly   714 ----YITTLM----MATK----------------------------------------------- 723
                :|.||:    |.|:                                               
Zfish  1466 KMKHFIQTLLKDPGMGTRCMANQPLENIFTCLNSSSDWEVPPVSPEVSNILSSPEWDSRNPSPSC 1530

  Fly   724 ----------------------PHHSGRPT---------FNISDYGVDKFTILLSVPV-SKSYTE 756
                                  |.....||         .|||||.|..:|.|:...: ||.:..
Zfish  1531 ECSTDLKLTMLPMCPAGAGGLPPRQRKEPTGDILLDMTNRNISDYLVKTYTKLIKTSLKSKYWVN 1595

  Fly   757 ERRADSIASLIKGKLKLIVVS-EQIKDYVDDKWKSREGR----REINFVSMAIDTGDRTGLIGWV 816
            |:|...|:  :.|:|.::.|. |:|::..     |:.||    |...:...|:|..: |.|    
Zfish  1596 EQRYGGIS--VGGRLPILDVDPEEIQNIF-----SQLGRMMNIRGGRYSKSAMDELE-TFL---- 1648

  Fly   817 GPRHYV---------------HAAPMILNLVYNALAQELIGPKIS-----IEVTSVPFTLRKK-- 859
               ||:               ||....||:..||:.:..:.|..:     |...:.|..|.|:  
Zfish  1649 ---HYMESEYNVKVWYNNKGWHAMASFLNVANNAILRAYLPPHANPSDYGITAINHPLNLTKEQL 1710

  Fly   860 -EDFLISNNGD--IPIYVIGYVSIAMIIFSSAVIQERVSHMKMLQEVSGLEMITYWLSHLAFDMV 921
             |..:::.:.|  :.|.||..:|.....|...:|||||:..|.||.|||:..:.||.::..:||:
Zfish  1711 SEVTVLTTSVDAVVAICVIFAMSFIPASFVLYLIQERVTKAKHLQFVSGVSPLVYWFANFFWDML 1775

  Fly   922 VFFILVLALLLPLYGY------APWYL-----LLCVLFFTGLAGLIFIYFLISMLSATFLAVSMI 975
            .:.:....::....|:      :|..|     |||:..::....:..:.::.::.|..::::|.|
Zfish  1776 NYSVSTAMVVAIFVGFDKKCYTSPTNLPALIALLCLYGWSVTPMMYPLSYMFNVPSTAYVSLSCI 1840

  Fly   976 LLSVIIGSLILMILGALALIFKMVYVAIYVANMHPLIAGYNCIQK---CFHYMSLCGSYISEAQN 1037
            .|.:.|.|      .|:..|.::      ..|...|:.....::|   .|.:..|....|..|.|
Zfish  1841 NLFIGINS------SAITFILEL------FENNRSLLMFNEVLKKVLLVFPHFCLGRGLIDMAMN 1893

  Fly  1038 PLSENLTS--DEMYCINPLA--FLEPRCVCVNPMTWPDMLVMLGTAIILFLLIMFFEYGSCVWYR 1098
            ....::.:  .|.:.::|..  |:.....|         :.:.|....:|.|::.:::....|..
Zfish  1894 QAVTDVYARFGEEFSMDPFRWNFVGKNLFC---------MAVEGFVYFIFNLLIQYKFFLHHWIS 1949

  Fly  1099 CKGCCPYSSKGSIEDPKVSREAEKI-RAMDADQIGTRALVVNGVSKKY-GCDQLAVNNISFALKP 1161
            ..|    .|.|:.||..|::|.|:| :..:.:.|    |::..:||.| ...:.||:.|...:..
Zfish  1950 DYG----MSLGTDEDDDVAQERERIYKGGNKNDI----LLIRDLSKTYRRRKRPAVDKICVGVPA 2006

  Fly  1162 SHCVGLLGPNGAGKTTTFKMIVGEHSIDKGNIYISGYSMRMKRNKAMKELGYCPQSDSFFEFLTG 1226
            ..|.||||.|||||||||||:.|:..:..|.:.::|||:........:.:|||||.|:..|.|||
Zfish  2007 GECFGLLGVNGAGKTTTFKMLTGDTDVTSGELSVAGYSILSNILDVHQNMGYCPQFDAIDELLTG 2071

  Fly  1227 RQLLKVFLLIWGFPSKDLNKRCEKLADQFGFRKHLDKKITYYSGGTKRKINAAVA-CGANSLICL 1290
            |:.|.::..:.|.|..::::..|....:.|..::.......||||.|||::.|:| .|...|:.|
Zfish  2072 REHLYLYARLRGIPESEISRVAEWGIQKLGLSEYAGNCAGTYSGGNKRKLSTAIAMIGCPPLVLL 2136

  Fly  1291 DEPSAGVDPASRRHVWTIINEVAQQGKAVLLTSHNMDEINALCSKSVILVDGSIYAMGSVQHVKN 1355
            |||:.|:||.|||.:||.|..:.:.|:||:||||:|:|..|||::..|:|:|:...:|::||:|.
Zfish  2137 DEPTTGMDPHSRRFLWTAILSIIRDGRAVVLTSHSMEECEALCTRLAIMVNGTFKCLGTIQHLKY 2201

  Fly  1356 KIAKGMTLKLVVNVQPDNMVAMLTKIEDDIYMTYPNAELKEKYEFSGRLTFQISKDTSWSEIFEY 1420
            |...|..:.:.:......:...|...|..:..::|....:||:  ...|.::|:. .|.:.:|:.
Zfish  2202 KFGGGYVVTMKIKAAKPGLSPDLVPAESFMDSSFPGCIQREKH--YNTLQYEIAA-ASLARVFQL 2263

  Fly  1421 VEGNRSSWHLEDYSLSQPSLEDAFEEIAEER 1451
            |..|:...::||||:||.:|:..|...|:::
Zfish  2264 VLTNKERLNIEDYSVSQTTLDQVFVNFAKQQ 2294

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG42816NP_730301.3 rim_protein <81..1451 CDD:130324 446/1684 (26%)
abca4bXP_021322694.1 rim_protein 1..2315 CDD:130324 452/1721 (26%)

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