DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG42816 and abca4b

DIOPT Version :9

Sequence 1:NP_730301.3 Gene:CG42816 / 39977 FlyBaseID:FBgn0261998 Length:1459 Species:Drosophila melanogaster
Sequence 2:XP_021322694.1 Gene:abca4b / 555506 ZFINID:ZDB-GENE-050517-4 Length:2327 Species:Danio rerio


Alignment Length:1721 Identity:452/1721 - (26%)
Similarity:760/1721 - (44%) Gaps:375/1721 - (21%)


- Green bases have known domain annotations that are detailed below.


  Fly    46 IKDLPSPPIFKSDNSSTLQDVGIMIIVIIIFFVVVSLTKSIVEEKELQLKVTLNLMGVGSCLQWV 110
            ::.:|.|.........||.....:.:|:...:.|..:.||||.|||::||.||..|||.:.:.|.
Zfish   634 LQQMPYPCYVDDMFMLTLNRCFPIFMVLAWIYSVSMVVKSIVLEKEMRLKETLKAMGVSNGVIWY 698

  Fly   111 AWYIQTFIIFLIGSSIITLFWKLVLPNSEISFMPFTHWSMALFV-LLVLSHCTICFSFLMSSLIS 174
            .|:|.:||:....::::|   .:|:....:::..    .:.||: ||..:..||...||||...:
Zfish   699 TWFIDSFIMMTASTALLT---GIVMAGKVLNYSN----PIILFLFLLTFTVATIMQCFLMSVFFN 756

  Fly   175 TTYRISLVTFLALIATYLPFLILHSKGCSEGLNVFLSLFLLS------GLQVLVVGICMWEDYGE 233
            .....:..:.:.....|||.:...:.......::.|::.|||      |.:.|    ..:|:.|.
Zfish   757 KANLAAACSGIIYFTLYLPHIFCFAWQDRITKDMKLAVSLLSPVAFGFGTEYL----SRYEEQGL 817

  Fly   234 GLQWGNLFETSWPGGTLSVGYILLVMILASFLSLLLCLYLEKIRPGPYGVPQPWHFPCTRC---- 294
            ||||.|:..:...|...|....:.:|:|.:.|..:|..||:.:.||.||:.:|::||....    
Zfish   818 GLQWDNIGTSPLEGDEYSFFTSIRMMLLDAVLYGVLAWYLDNVFPGQYGIGRPFYFPLQSSYWLK 882

  Fly   295 ----CSTESLLPYSRLFNRI-------FGIYSAAPD----------------------------E 320
                ..|.:.:|...|.|.:       :|  ..:|:                            |
Zfish   883 PSPPSETSNAVPEKPLENHVEKQEDVEYG--GLSPEHRECNGSRNSKHCKHKEKRERMEKERERE 945

  Fly   321 ERPDLQ----------------LIEPDPVDKIAGVQIRGLSKTFGKME--VVKNVSFDMFEGQIT 367
            |:..:|                ..||:|...:.||.::.|.|.:.:..  .|..::.:.:|.|||
Zfish   946 EQLKMQEEIQQEEIQQWYCENPFFEPEPESLLIGVSVQDLVKMYNRYSRPAVDCLNMNFYESQIT 1010

  Fly   368 VLMGHNGAGKTTLISMLAGFISPTSGTALINGFDIRQERRQAQRCIGLCPQQNVLFKHLSSVSHI 432
            ..:|||||||||.:|:|.|...||||||.|.|.|||.|....::.:|:|||.|:|||||:...||
Zfish  1011 SFLGHNGAGKTTTLSILTGLFPPTSGTAYIYGRDIRTEMDAIRQSLGMCPQHNILFKHLTVEEHI 1075

  Fly   433 QLFSRLRGLRGAEVKSEVQNYLKKLNLQEKKRLAARNLSGGTQRRLSVACSLCGGVKVLICDEPS 497
            ..:|.::|....|.:.||:|.|:.|.|..|:...|:|||||.||:||||.:..||.:|:|.|||:
Zfish  1076 LFYSLMKGREHKEAEQEVENMLEDLGLPHKRDEEAQNLSGGMQRKLSVAMAFVGGSRVVILDEPT 1140

  Fly   498 TGLDPSARRELWRLILEAKEGCTILLTTHQLDDGEVLGDRVVIISDGQLRCIGSLPFLKKQVDAS 562
            :|:||.:||.:|.|:|:.:.|.|::|:||.:|:.::|.|||.|||.|:|.|.||..|||......
Zfish  1141 SGVDPYSRRSIWDLLLKYRTGRTVILSTHHMDEADLLSDRVAIISKGKLHCSGSPLFLKNCFGVG 1205

  Fly   563 CLIT--------------CEARKRC-------------------------DLEKLTSLISRHVGT 588
            ..:|              |:....|                         ::|.:|:||..||..
Zfish  1206 FYLTLVRRMKDQRKKENECDCASECSCTCSTCTRYKEESQALQPERVLDGNVESITTLIHHHVPE 1270

  Fly   589 IQPFSIKGRDVCYKLPLSKSKY--FSSLFRDLESQMNILGVRGFSLSSVSLEEIFMSFGAED--- 648
            .:...:.|:::.|.||....||  ::||||:||..:..:|:..|.:|..||||||:...|:.   
Zfish  1271 AKLIEMIGQEMTYLLPNKGFKYRAYASLFRELEETLGDMGLSSFGISDTSLEEIFLKVTADGEAA 1335

  Fly   649 ----------LNSRQSGGAEKRDDDDRDDDE------ENEVQDGNV-RSCK------KQWRAMMT 690
                      |..|::|....:|....:|..      |::..:|.. |..|      ||:.|::.
Zfish  1336 NSSVTPEQWMLQQRKNGNGFMKDTGLAEDANGVGASLESDSSEGRASRQVKGFSLVLKQFHALLV 1400

  Fly   691 KK----------------------VMALYDNKVY-----FLLLLLTPIVY--------------- 713
            |:                      ::||....:.     :..|.|||.:|               
Zfish  1401 KRFHHATRSHKDFLAQIVLPASFVLIALVFTMIVPPFGEYPCLTLTPWMYGPQFTFISNEQPSHP 1465

  Fly   714 ----YITTLM----MATK----------------------------------------------- 723
                :|.||:    |.|:                                               
Zfish  1466 KMKHFIQTLLKDPGMGTRCMANQPLENIFTCLNSSSDWEVPPVSPEVSNILSSPEWDSRNPSPSC 1530

  Fly   724 ----------------------PHHSGRPT---------FNISDYGVDKFTILLSVPV-SKSYTE 756
                                  |.....||         .|||||.|..:|.|:...: ||.:..
Zfish  1531 ECSTDLKLTMLPMCPAGAGGLPPRQRKEPTGDILLDMTNRNISDYLVKTYTKLIKTSLKSKYWVN 1595

  Fly   757 ERRADSIASLIKGKLKLIVVS-EQIKDYVDDKWKSREGR----REINFVSMAIDTGDRTGLIGWV 816
            |:|...|:  :.|:|.::.|. |:|::..     |:.||    |...:...|:|..: |.|    
Zfish  1596 EQRYGGIS--VGGRLPILDVDPEEIQNIF-----SQLGRMMNIRGGRYSKSAMDELE-TFL---- 1648

  Fly   817 GPRHYV---------------HAAPMILNLVYNALAQELIGPKIS-----IEVTSVPFTLRKK-- 859
               ||:               ||....||:..||:.:..:.|..:     |...:.|..|.|:  
Zfish  1649 ---HYMESEYNVKVWYNNKGWHAMASFLNVANNAILRAYLPPHANPSDYGITAINHPLNLTKEQL 1710

  Fly   860 -EDFLISNNGD--IPIYVIGYVSIAMIIFSSAVIQERVSHMKMLQEVSGLEMITYWLSHLAFDMV 921
             |..:::.:.|  :.|.||..:|.....|...:|||||:..|.||.|||:..:.||.::..:||:
Zfish  1711 SEVTVLTTSVDAVVAICVIFAMSFIPASFVLYLIQERVTKAKHLQFVSGVSPLVYWFANFFWDML 1775

  Fly   922 VFFILVLALLLPLYGY------APWYL-----LLCVLFFTGLAGLIFIYFLISMLSATFLAVSMI 975
            .:.:....::....|:      :|..|     |||:..::....:..:.::.::.|..::::|.|
Zfish  1776 NYSVSTAMVVAIFVGFDKKCYTSPTNLPALIALLCLYGWSVTPMMYPLSYMFNVPSTAYVSLSCI 1840

  Fly   976 LLSVIIGSLILMILGALALIFKMVYVAIYVANMHPLIAGYNCIQK---CFHYMSLCGSYISEAQN 1037
            .|.:.|.|      .|:..|.::      ..|...|:.....::|   .|.:..|....|..|.|
Zfish  1841 NLFIGINS------SAITFILEL------FENNRSLLMFNEVLKKVLLVFPHFCLGRGLIDMAMN 1893

  Fly  1038 PLSENLTS--DEMYCINPLA--FLEPRCVCVNPMTWPDMLVMLGTAIILFLLIMFFEYGSCVWYR 1098
            ....::.:  .|.:.::|..  |:.....|         :.:.|....:|.|::.:::....|..
Zfish  1894 QAVTDVYARFGEEFSMDPFRWNFVGKNLFC---------MAVEGFVYFIFNLLIQYKFFLHHWIS 1949

  Fly  1099 CKGCCPYSSKGSIEDPKVSREAEKI-RAMDADQIGTRALVVNGVSKKY-GCDQLAVNNISFALKP 1161
            ..|    .|.|:.||..|::|.|:| :..:.:.|    |::..:||.| ...:.||:.|...:..
Zfish  1950 DYG----MSLGTDEDDDVAQERERIYKGGNKNDI----LLIRDLSKTYRRRKRPAVDKICVGVPA 2006

  Fly  1162 SHCVGLLGPNGAGKTTTFKMIVGEHSIDKGNIYISGYSMRMKRNKAMKELGYCPQSDSFFEFLTG 1226
            ..|.||||.|||||||||||:.|:..:..|.:.::|||:........:.:|||||.|:..|.|||
Zfish  2007 GECFGLLGVNGAGKTTTFKMLTGDTDVTSGELSVAGYSILSNILDVHQNMGYCPQFDAIDELLTG 2071

  Fly  1227 RQLLKVFLLIWGFPSKDLNKRCEKLADQFGFRKHLDKKITYYSGGTKRKINAAVA-CGANSLICL 1290
            |:.|.::..:.|.|..::::..|....:.|..::.......||||.|||::.|:| .|...|:.|
Zfish  2072 REHLYLYARLRGIPESEISRVAEWGIQKLGLSEYAGNCAGTYSGGNKRKLSTAIAMIGCPPLVLL 2136

  Fly  1291 DEPSAGVDPASRRHVWTIINEVAQQGKAVLLTSHNMDEINALCSKSVILVDGSIYAMGSVQHVKN 1355
            |||:.|:||.|||.:||.|..:.:.|:||:||||:|:|..|||::..|:|:|:...:|::||:|.
Zfish  2137 DEPTTGMDPHSRRFLWTAILSIIRDGRAVVLTSHSMEECEALCTRLAIMVNGTFKCLGTIQHLKY 2201

  Fly  1356 KIAKGMTLKLVVNVQPDNMVAMLTKIEDDIYMTYPNAELKEKYEFSGRLTFQISKDTSWSEIFEY 1420
            |...|..:.:.:......:...|...|..:..::|....:||:  ...|.::|:. .|.:.:|:.
Zfish  2202 KFGGGYVVTMKIKAAKPGLSPDLVPAESFMDSSFPGCIQREKH--YNTLQYEIAA-ASLARVFQL 2263

  Fly  1421 VEGNRSSWHLEDYSLSQPSLEDAFEEIAEER 1451
            |..|:...::||||:||.:|:..|...|:::
Zfish  2264 VLTNKERLNIEDYSVSQTTLDQVFVNFAKQQ 2294

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG42816NP_730301.3 CcmA 336..643 CDD:224054 133/349 (38%)
ABC_subfamily_A 339..556 CDD:213230 100/218 (46%)
ABC2_membrane_3 <821..1018 CDD:289468 50/232 (22%)
CcmA 1135..1450 CDD:224054 109/316 (34%)
ABC_subfamily_A 1136..1354 CDD:213230 86/219 (39%)
abca4bXP_021322694.1 AAA 1..2315 CDD:333001 452/1721 (26%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E2759_KOG0059
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 1 1.010 - - QHG53524
OrthoDB 1 1.010 - - D131191at2759
OrthoFinder 1 1.000 - - FOG0000051
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 1 0.900 - - OOG6_100045
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
65.730

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