DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG42816 and ABCA

DIOPT Version :9

Sequence 1:NP_730301.3 Gene:CG42816 / 39977 FlyBaseID:FBgn0261998 Length:1459 Species:Drosophila melanogaster
Sequence 2:NP_608445.2 Gene:ABCA / 33103 FlyBaseID:FBgn0031170 Length:1714 Species:Drosophila melanogaster


Alignment Length:1581 Identity:518/1581 - (32%)
Similarity:850/1581 - (53%) Gaps:206/1581 - (13%)


- Green bases have known domain annotations that are detailed below.


  Fly     5 DGSYP--LYKTGFLAVQQALSQVHIKHKCKEFNKTQGDIKFPPIKDLPSP-----PIFKSDNSST 62
            ||..|  ..:.|||.:|.:||..:::.|..|     .|:....:|..|.|     |:.:..:|  
  Fly   213 DGGIPPGYLREGFLPLQHSLSMAYLRQKSGE-----QDLPNVVMKRYPFPAYIFDPLLEGMSS-- 270

  Fly    63 LQDVGIMIIVIIIFFV--VVSLTKSIVEEKELQLKVTLNLMGVGSCLQWVAWYIQTFIIFLIGSS 125
                 ||.::|::.|:  ...:||.|..|||.|||..:.:||:.:.|.|.||::::||:..|.:.
  Fly   271 -----IMSLIILLSFIYPCTYITKYITAEKEKQLKEVMKIMGLSNWLHWTAWFVKSFIMLTISAI 330

  Fly   126 IITLFWKLVLPNSEISFMPFTHWSMALFVLLVLSHCTICFSFLMSSLISTTYRISLVTFLALIAT 190
            :|.:..|:.. :.:::.:...:::..:|.|::....:|||.|:|::..|.....:.||.|.....
  Fly   331 LIAILVKINW-SEDVAVLTHANFTALVFFLIIYIVSSICFCFMMATFFSRASTAAAVTGLIWFIA 394

  Fly   191 YLPF---------LILHSKGCSEGLNVFLSLFLLSGLQVLVVGICMWEDYGEGLQWGNLFETSWP 246
            |:|:         |.|.||   .|.::..:..:..|:: |::|   :|..||||||.|.|.....
  Fly   395 YIPYSFTINSYDDLSLSSK---LGWSLISNTAMGFGIK-LILG---FEGTGEGLQWSNFFTPVSV 452

  Fly   247 GGTLSVGYILLVMILASFLSLLLCLYLEKIRPGPYGVPQPWHFPCTR---CCSTESLLPYSRLFN 308
            ..||::|.::::|:::..:.:::|||:|::.||.:|||:||:||.||   |...|          
  Fly   453 DDTLTLGAVMIMMLVSCVIYMIICLYVEQVMPGSFGVPRPWNFPFTREFWCGERE---------- 507

  Fly   309 RIFGIYSAAPD-----EERPDLQLIEPDPVDKIAGVQIRGLSKTFGKMEVVKNVSFDMFEGQITV 368
                 |:...|     .|:.|.:..|.:|..|..|:|:|.|.|.||...|||.:|.:|||.:|||
  Fly   508 -----YTGVEDIPNGHVEQRDPKAFETEPEGKHIGLQMRHLKKRFGNKMVVKGLSMNMFEDEITV 567

  Fly   369 LMGHNGAGKTTLISMLAGFISPTSGTALINGFDIRQERRQAQRCIGLCPQQNVLFKHLSSVSHIQ 433
            |:|||||||||.||||.|...||||||:|||.|||.....|:..:|:|||.||||..:|..:||:
  Fly   568 LLGHNGAGKTTTISMLTGMFPPTSGTAIINGSDIRTNIEGARMSLGICPQHNVLFDEMSVSNHIR 632

  Fly   434 LFSRLRGLRGAEVKSEVQNYLKKLNLQEKKRLAARNLSGGTQRRLSVACSLCGGVKVLICDEPST 498
            .|||::||||..|:.||..|||.:.|::|..:|:..||||.:|:|||.|:|||..||::|||||:
  Fly   633 FFSRMKGLRGKAVEQEVAKYLKMIELEDKANVASSKLSGGMKRKLSVCCALCGDTKVVLCDEPSS 697

  Fly   499 GLDPSARRELWRLILEAKEGCTILLTTHQLDDGEVLGDRVVIISDGQLRCIGSLPFLKKQVDASC 563
            |:||||||:||.|:.:.|.|.|:|||||.:|:.:|||||:.|:.||:|:|.|:..|||||..:..
  Fly   698 GMDPSARRQLWDLLQQEKVGRTLLLTTHFMDEADVLGDRIAIMCDGELKCQGTSFFLKKQYGSGY 762

  Fly   564 LITCEARKRCDLEKLTSLISRHVGTIQPFSIKGRDVCYKLPLSKSKYFSSLFRDLESQMNILGVR 628
            .:.|..|..|:..::|:|:::::..::|....|.::.|:||.|.|..|..:|..||.|.:.|.:.
  Fly   763 RLICVKRDDCETNEVTALLNKYIPGLKPECDIGAELSYQLPDSASAKFEEMFGQLEEQSDELHLN 827

  Fly   629 GFSLSSVSLEEIFMSFGAE--------DLNSRQSGGAEKRDDDDRDDDEENEVQDGNVRSCK--- 682
            |:.:...|:||:||..|||        |.:...:||:..|.:||.:..:.:.:...|.|..:   
  Fly   828 GYGVGITSMEEVFMKVGAEKDNTGNIKDQHEIMNGGSGFRGEDDNESVQSDGIFSENRRLLQGLQ 892

  Fly   683 ---KQWRAMMTKKVMALYDNKVYFLLLLLTPIVYYITTLMM--------ATKPHHSGRPTFNISD 736
               .||:||:.||.:..:.||:..|:..:.|:.:.:.|:::        ..||     .|.:::.
  Fly   893 LLSNQWKAMLLKKFLYTWRNKLLLLIQNIMPVFFVVVTILIIKTQGTFQELKP-----ITISLTQ 952

  Fly   737 YGVDKFTIL--LSVPVSKSYTEERRADSIASLIKGKLKLIVVSEQ-IKDYVDDKWKSREGRREIN 798
            |.: ..|:|  .:|.....|....:.:.:|........|.:...| .:||:.|..|:.:.|  ||
  Fly   953 YPL-AVTVLDRSNVQNGTGYEIANKYEDLARSYGSNYGLELTGTQGFEDYILDLGKTIQVR--IN 1014

  Fly   799 FVSMAIDTGDRTGLIGWVGPRHYVHAAPMILNLVYNALAQELIGPKISIEVTSVPF---TLRKKE 860
            ...:...|...:.:..|:. ...:|.||:.:|:|:||:|.:|.|..:.|:||:.|.   |.....
  Fly  1015 SRYLVAATITESKITAWLN-NQALHTAPLTVNMVHNAIADKLFGSSVKIQVTNAPLPYTTSTLLS 1078

  Fly   861 DFLISNNGDIPI-----YVIGYVSIAMIIFSSAVIQERVSHMKMLQEVSGLEMITYWLSHLAFDM 920
            .....||....:     :.:.:||...|:|   :|:||.|..|:||.|.|:::.|:|||....|.
  Fly  1079 QLSTGNNLGTQLASNLCFCMCFVSSIYILF---LIKERESRAKLLQFVGGVKVWTFWLSQFICDF 1140

  Fly   921 VVFFILVLALLLPL----------YGYAPWYLLLCVLFFTGLAGLIFIYFL-------------I 962
            ..:.:..|.:::.:          :|....|.||.:||  |.|.|.|||.:             :
  Fly  1141 ASYIVTALIVVITIVCFQETGLSTFGELGRYYLLLLLF--GFAVLPFIYIMSLFFREPATGFARV 1203

  Fly   963 SMLSATFLAVSMILLSVIIGSLIL------MILGALALIFKMVYVAIYVANMHPLIAGYNCIQKC 1021
            |::: .|..:::.::.|::.|.:.      .|||.:..||....:|:.:..::...|..|...| 
  Fly  1204 SIVN-IFCGMALFIVVVVMSSELFDTKDTADILGWIFRIFPHFSLAMSLNKVYTNTATRNACAK- 1266

  Fly  1022 FHYMSLCGSYISEAQNPLSENLTSDEMYCINPLAFLEPRCVCVNP-MTW------PDMLVMLGTA 1079
                       :.|..|:.             |..|.|:|..:.| ..|      |:.:.|..|.
  Fly  1267 -----------AGALPPIL-------------LCELVPQCCNLKPYFAWEEPGVLPETVYMAVTG 1307

  Fly  1080 IILFLLIMFFEYG--SCVWYRCKGCC----PYSSKGSIEDPKVSREAEKIRAMDADQIGTRALVV 1138
            ::.||:|:..|:.  :.:.::.:...    |..::|.::| .|:.|.|:|..|.::::.|:.||:
  Fly  1308 VVFFLIIIVLEFRLINELMFKIRQLISKPPPPPTEGQLDD-DVANERERILQMSSNELATKNLVL 1371

  Fly  1139 NGVSKKYGCDQLAVNNISFALKPSHCVGLLGPNGAGKTTTFKMIVGEHSIDKGNIYISGYSMRMK 1203
            :.|:|.|| ..:|||.:|..::...|.||||.|||||||||||:.|:..|..|..|:.|.|:...
  Fly  1372 DRVTKYYG-QFMAVNQVSLCVQEVECFGLLGVNGAGKTTTFKMMTGDERISSGAAYVQGLSLESN 1435

  Fly  1204 RNKAMKELGYCPQSDSFFEFLTGRQLLKVFLLIWGFPSKDLNKRCEKLADQFGFRKHLDKKITYY 1268
            .|...|.:|||||.|:..:.||||::|::|.::.|.....:.:..|.||..|||.||:||:...|
  Fly  1436 MNSIYKMIGYCPQFDALLDDLTGREVLRIFCMLRGVQESRIRQLSEDLAKSFGFMKHIDKQTHAY 1500

  Fly  1269 SGGTKRKINAAVA-CGANSLICLDEPSAGVDPASRRHVWTIINEVAQQGKAVLLTSHNMDEINAL 1332
            |||.|||::.|:| .|:.|:|.||||:.|:|||:||.:|.::..:...||:::||||:|:|..||
  Fly  1501 SGGNKRKLSTAIAVIGSPSVIYLDEPTTGMDPAARRQLWNMVCRIRDSGKSIVLTSHSMEECEAL 1565

  Fly  1333 CSKSVILVDGSIYAMGSVQHVKNKIAKGMTLKLVV--NVQ--------------PDNMV--AMLT 1379
            |::..|:|:|....:||.||:|||.:||:.||:.|  |::              ||...  |.::
  Fly  1566 CTRLAIMVNGEFKCIGSTQHLKNKFSKGLILKIKVRRNLEALRQARLSGGYARNPDEQTVPAQMS 1630

  Fly  1380 K-----IEDDIYMTYPNAELKEKYEFSGRLTFQIS-KDTSWSEIFEYVEGNRSSWHLEDYSLSQP 1438
            :     :::.:...|||:.|:|:|:  |.|||.|. ....||.||..:|.||...::||||:||.
  Fly  1631 QRDIDAVKEFVETEYPNSILQEEYQ--GILTFYIPLTGVKWSRIFGLMESNRDQLNVEDYSVSQT 1693

  Fly  1439 SLEDAFEEIAE-ERRKKKSNQ 1458
            :||:.|.|.|: :|...::||
  Fly  1694 TLEEIFLEFAKYQREDTRANQ 1714

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG42816NP_730301.3 CcmA 336..643 CDD:224054 149/306 (49%)
ABC_subfamily_A 339..556 CDD:213230 121/216 (56%)
ABC2_membrane_3 <821..1018 CDD:289468 60/233 (26%)
CcmA 1135..1450 CDD:224054 139/340 (41%)
ABC_subfamily_A 1136..1354 CDD:213230 98/218 (45%)
ABCANP_608445.2 ABC2_membrane_4 254..434 CDD:289500 49/194 (25%)
ABC2_membrane_3 <269..475 CDD:289468 59/220 (27%)
CcmA 538..843 CDD:224054 149/304 (49%)
ABC_subfamily_A 538..755 CDD:213230 121/216 (56%)
ABC2_membrane_3 913..1316 CDD:289468 99/442 (22%)
ABC_subfamily_A 1369..1587 CDD:213230 98/218 (45%)
drrA 1376..1702 CDD:130256 134/328 (41%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 144 1.000 Domainoid score I1483
eggNOG 1 0.900 - - E2759_KOG0059
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 228 1.000 Inparanoid score I138
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D131191at2759
OrthoFinder 1 1.000 - - FOG0000051
OrthoInspector 1 1.000 - - otm51427
orthoMCL 1 0.900 - - OOG6_100045
Panther 1 1.100 - - P PTHR19229
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X215
109.870

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