DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG42816 and Abca6

DIOPT Version :9

Sequence 1:NP_730301.3 Gene:CG42816 / 39977 FlyBaseID:FBgn0261998 Length:1459 Species:Drosophila melanogaster
Sequence 2:XP_006247716.1 Gene:Abca6 / 303639 RGDID:1308998 Length:1630 Species:Rattus norvegicus


Alignment Length:1602 Identity:402/1602 - (25%)
Similarity:704/1602 - (43%) Gaps:315/1602 - (19%)


- Green bases have known domain annotations that are detailed below.


  Fly     7 SYP--------LYKTGFLAVQQALS----QVHIKHKCKE-------FNKTQGDIKFPPIKDLP-- 50
            :||        .:|.||:|:|.|::    :|..||...|       ||          :|.||  
  Rat   163 TYPHVFCSLTRYWKRGFVALQTAINAAIIEVTTKHPVMEELMSVNAFN----------MKTLPFI 217

  Fly    51 SPPIFKSDNSSTLQDVGIMIIVIIIFF--VVVSLTKSIVEEKELQLKVTLNLMGVGSCLQWVAW- 112
            |..||:.:         |.|:..:::|  .:...::|:.:|:: ..|..:.:||:.....|::| 
  Rat   218 SKDIFQYE---------IFILFCLLYFSSFIYFASRSVTKERK-HSKEFMKVMGLQDSAFWLSWG 272

  Fly   113 --YIQTFIIFLIGSSIITLFWKLVLPNSEISFMPFTHWSMALFVLLVLSHCTICFSFLMSSLIST 175
              |:....||       ::|..:::.::.|..|........||.|..||  .|..:|||:.|:..
  Rat   273 LIYVGFIFIF-------SVFIAVIITSTRIIVMTGFLVIFTLFFLYGLS--VIAVTFLMAVLLQK 328

  Fly   176 TYRISLVTFL-ALIATYLPFLILHSKGCSEGLNVFLSLFLLSGLQVLVVGICMWEDYGEG----- 234
            ....:|..|| .|....:.|.:||.:             |.|.|: .|:.||....:..|     
  Rat   329 AIITNLFVFLFNLFWGCVGFTVLHKE-------------LPSSLE-WVLSICSPFAFTSGMTKII 379

  Fly   235 -LQW---GNLFETSWPGGTLSVGYILLVM--ILA--SFLSLLLCLYLEKIRPGPYGVPQPWHFPC 291
             |::   |.:|..  |.|.   .|:::.:  |||  ..|.|:|.||.:||            .||
  Rat   380 FLEYNLNGVVFPD--PSGE---SYVMIAVFFILAFDGLLYLVLALYFDKI------------LPC 427

  Fly   292 ---TRCCSTESLLPYSRLFNRIF--GIYSAAPDEERPDLQLIEP-DPVDKIAG---VQIRGLSKT 347
               .|......|.|.|....|..  .:.....|.|.|..:..|| ||  :..|   ::||.:.|.
  Rat   428 GADRRAAPLFFLNPVSCFRKRTSRNKVTERDIDPELPSDEYFEPVDP--EYQGKEAIRIRNIRKE 490

  Fly   348 F----GKMEVVKNVSFDMFEGQITVLMGHNGAGKTTLISMLAGFISPTSGTALINGFDI--RQER 406
            :    ||:|.:|.:.||::|.|||.::||.||||::|:::|.|...||||.|.:...::  .|:.
  Rat   491 YKGKSGKVEALKGLFFDVYESQITAVLGHGGAGKSSLLNILNGLSVPTSGLATVYNKNLSEMQDL 555

  Fly   407 RQAQRCIGLCPQQNVLFKHLSSVSHIQLFSRLRGLRGAEVKSEVQNYLKKLNLQEKKRLAARNLS 471
            ::.::.||:|||.||.|..|:...::.||:.::|:....|..|||..|.:|::|..:...|.:||
  Rat   556 KEIRKMIGVCPQHNVQFDALTVKENLTLFANIKGIVPQSVAQEVQQILSELDMQTIQDELAEHLS 620

  Fly   472 GGTQRRLSVACSLCGGVKVLICDEPSTGLDPSARRELWRLILEAKEGCTILLTTHQLDDGEVLGD 536
            .|.:|:|:...::.|..::|:.|||:.||||.:|:.:|..:.|.:....||.:|...|:.::|.|
  Rat   621 EGQKRKLTFGVAILGDPRILLLDEPTAGLDPFSRQRVWGFLKERRADRVILFSTQFTDEADILAD 685

  Fly   537 RVVIISDGQLRCIGSLPFLKKQVDASCLITCEARKRCDLEKLTSLISRHVGTIQPFSIKGRDVCY 601
            |.||:|:|.|:|.||..|||::......::....:.||.|:|||.|:.|:...:..:.....:.|
  Rat   686 RKVILSNGALKCTGSSVFLKRKWGLGYHLSLFMNETCDSEQLTSFINHHIPGAKLKAKTKEKLVY 750

  Fly   602 KLPLSKSKYFSSLFRDLESQMNILGVRGFSLSSVSLEEIFMSFGAEDLNSRQSGGAEKRDDDDRD 666
            .|||.|:..|...|.||:.... .|:..:.:|..:|.|:||:...|...::.....|...|.  |
  Rat   751 TLPLEKTSKFPEFFSDLDKYSG-QGLMNYEVSMSTLNEVFMNLEGEPSTTQDFEKGETLTDS--D 812

  Fly   667 DDEENEVQDGNVRSCKKQ------WR----AMMTKKVMALYDNKVYFLLLL------LTPIV-YY 714
            ...|.||...::...:|.      ||    |:...:|:.|...:..||..|      |.|:: .|
  Rat   813 SLNEMEVAPPSLSKAQKTMSAMSLWRMQVCAIARLRVLKLRRERKAFLTFLPLLGISLIPLITEY 877

  Fly   715 ITTLMMATKPHHSGRPTFNISDYGVDKF------------TILLSVPVSKSYTEERRADSIASLI 767
            :...::..|.:.         ::..|.:            |.||.:    :.||....|.:.|| 
  Rat   878 MANALIEVKTNW---------EFKTDLYFLSPGQLPQGLRTSLLVI----NNTESNIEDFVQSL- 928

  Fly   768 KGKLKLIVVSEQIKDYVDDKWKSREGRREINFVSMAIDTGDRTGLIGWVGPRHY----------V 822
              |.:.||:.      ||| :::|.....:::....|.:|.:         :.|          :
  Rat   929 --KHQNIVLE------VDD-FENRNATESLSYNGAIIVSGRQ---------KDYRFSAVCNTKRL 975

  Fly   823 HAAPMILNLVYNALAQELIGPKISIEVTSVPFTLRKKEDFLISNNGDIPIYVIGY------VSIA 881
            |..|:::|::.|.:.:.|...:          .:|.:||.|.|.     |.|:.:      :||.
  Rat   976 HCFPILMNVISNGILRMLNHTQ----------HIRLEEDVLSSG-----IVVVWFGILEASLSIL 1025

  Fly   882 MIIFSSA--VIQERVSHMKMLQE----VSGLEMITYWLSHLAFDMVV--------FFILVLALLL 932
            .|:.|.:  :....:|..|...:    :|||....||......|:.:        :..|....|:
  Rat  1026 FIVCSVSPHIAMSSISDFKKKADSQLWISGLYPSAYWCGQALVDITLLSGILLTGYITLYTTKLM 1090

  Fly   933 PLYGYAPWYLLLCVLFFTGLAGLIFIYFLISML-------SATFLAVSMILLSVIIGSLILMILG 990
            .:|......|.:.:|.|...|.|:|:.::||.:       |..:.....|:::::..::::....
  Rat  1091 HIYLTGEIVLSIVLLAFGCAASLVFLTYVISFVFGKKRKNSGLWSICFFIVITIMFDTVLMDPFN 1155

  Fly   991 ALALIFKMVYVAIYVANMHPLIAGYNCIQKCFHYMSLCGSYISEAQNPLSENLTSDEMYCINPLA 1055
            ...||..|:.|..:..|...::......|   :|..     ..|::..||   ..|.:.|:.|  
  Rat  1156 EALLISAMMLVPSFSLNALLIVLEMRAYQ---YYRE-----FGESKYGLS---GVDLLLCLIP-- 1207

  Fly  1056 FLEPRCVCVNPMTWPDMLVMLGTAIILFLL-IMFFEYGSCV-----WYRCKGCCPYS-------S 1107
                               ...|.:.:|:| .:..:||..|     .:|   ..|.|       .
  Rat  1208 -------------------YFHTLLFIFVLRCLELKYGKNVVRKDPLFR---IAPQSLHVQPNPE 1250

  Fly  1108 KGSIEDPKVSREAEKIRAMDA------DQIGTRALVVNGVSKKYG------CD----QLAVNNIS 1156
            :...||..|  :||::|..||      |:  ..|::.:.:.|:|.      |.    ::||.|||
  Rat  1251 EPVDEDEDV--QAERMRTSDALSTVNLDE--KPAIIASCLHKEYTGQKKWCCSKRRKKIAVRNIS 1311

  Fly  1157 FALKPSHCVGLLGPNGAGKTTTFKMIVGEHSIDKGNIYISGYSMRMK---RNKAMKELGYCPQSD 1218
            |.:.....:|||||.||||:::.:||.|......|.:.:...|..:.   ......:||||||.:
  Rat  1312 FCVNKGEILGLLGPEGAGKSSSLRMIAGIMKPTAGEVELKELSSAVAHQGEGHGAAKLGYCPQEN 1376

  Fly  1219 SFFEFLTGRQLLKVFLLIWGFPSKDLNKRCEKLADQFGFRKHLDKKITYYSGGTKRKINAAVACG 1283
            ..:..||.::.|:|:..:.|...||......:|.:.|.....|:.:......|..||:..|::..
  Rat  1377 VLWPILTVKEHLEVYAAVKGLRKKDAVIAISRLVNAFKLHDQLNVQARNLVVGLTRKLCFALSIL 1441

  Fly  1284 ANS-LICLDEPSAGVDPASRRHVWTIIN-EVAQQGKAVLLTSHNMDEINALCSKSVILVDGSIYA 1346
            .|| ::.|||||.|:|.:.::.:|..|. .|....|.|||::|::.|..|||.::.|:|.|.:..
  Rat  1442 GNSPVLILDEPSTGLDVSGKQQMWQAIQAAVKDNKKGVLLSTHDLAEAEALCDRAAIMVSGRLRL 1506

  Fly  1347 MGSVQHVKNKIAKGMTLKLVVNVQPDNMVAMLTKIEDDIYMTYPNAELKEKYEFSGRLTFQ--IS 1409
            :||:||:|.:..|...|:|.|     ..::....:..:|...:|.|..:::. || .||::  ::
  Rat  1507 IGSIQHLKRRFGKDYILELRV-----KEISQEPLVHKEILRLFPQAARQDRC-FS-LLTYKLPVT 1564

  Fly  1410 KDTSWSEIFEYVEGNRSSWHLEDYSLSQPSLEDAFEEIAEER 1451
            .....|:.|..:|..:..::|:||||||.:|:..|.|:::|:
  Rat  1565 DVHPLSQAFHKLEAVKRGFNLDDYSLSQCTLDRVFLELSKEQ 1606

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG42816NP_730301.3 CcmA 336..643 CDD:224054 106/315 (34%)
ABC_subfamily_A 339..556 CDD:213230 81/222 (36%)
ABC2_membrane_3 <821..1018 CDD:289468 43/233 (18%)
CcmA 1135..1450 CDD:224054 97/331 (29%)
ABC_subfamily_A 1136..1354 CDD:213230 71/232 (31%)
Abca6XP_006247716.1 ABC2_membrane_3 35..420 CDD:289468 72/304 (24%)
ABC2_membrane_4 220..409 CDD:289500 50/226 (22%)
CcmA 480..795 CDD:224054 106/315 (34%)
ABC_subfamily_A 482..705 CDD:213230 81/222 (36%)
ABC2_membrane_3 859..1171 CDD:289468 67/358 (19%)
ABC2_membrane_4 1007..1178 CDD:289500 33/175 (19%)
CcmA 1279..1605 CDD:224054 97/332 (29%)
ABC_subfamily_A 1300..1514 CDD:213230 68/213 (32%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E2759_KOG0059
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D131191at2759
OrthoFinder 1 1.000 - - FOG0000051
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 1 0.900 - - OOG6_100045
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
65.720

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