DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG42816 and Abca12

DIOPT Version :9

Sequence 1:NP_730301.3 Gene:CG42816 / 39977 FlyBaseID:FBgn0261998 Length:1459 Species:Drosophila melanogaster
Sequence 2:XP_237242.6 Gene:Abca12 / 301482 RGDID:1304586 Length:2595 Species:Rattus norvegicus


Alignment Length:1668 Identity:440/1668 - (26%)
Similarity:747/1668 - (44%) Gaps:335/1668 - (20%)


- Green bases have known domain annotations that are detailed below.


  Fly    10 LYKTGFLAVQQALSQVHIKHKCKEFNKTQGDIKFPPIKDLPSPPIFKSDNSSTLQDVGIMIIVII 74
            :|...|:.:|.::.:..|:.:... |..:..::   ::.:|. |.|..||..|.....:.|::::
  Rat  1013 IYGRAFIYLQDSIERAIIELQTGR-NSQEVAVQ---VQAVPY-PCFMKDNFLTSVSYSLPIVLMV 1072

  Fly    75 IFFV-VVSLTKSIVEEKELQLKVTLNLMGVGSCLQWVAWYIQT--FIIFLIGSSIITLFWKLVLP 136
            .:.| :.:..|.:|.||:|:|...:.:|||.||..:.||.|::  |::..|...|:.|.:..:||
  Rat  1073 AWVVFIAAFVKKLVYEKDLRLHEYMKMMGVNSCSHFFAWLIESIGFLLVTIAILIVILKFGNILP 1137

  Fly   137 --NSEISFMPFTHWSMALFVLLVLSHCTICFSFLMSSLISTTYRISLVTFLALIATYLPFLILHS 199
              |..|.|:.|:.:|.::          |..|:|:|...:.|...:|:..|..:..:.||::|.:
  Rat  1138 KTNGFILFLYFSDYSFSV----------IAMSYLISVFFNNTNIAALIGSLIYVIAFFPFIVLVT 1192

  Fly   200 --KGCSEGLNVFLSLFLLSGLQVLVVGICMWEDYGEGLQWGNLFETSWPGGTLSVGYILLVMILA 262
              ...|..:.||:||...:........|..:|:.|.||||.|::::.....|.|.|::..:::..
  Rat  1193 VEDELSYVIKVFMSLLSPTAFSYASQYIARYEEQGIGLQWENMYKSPVQDDTTSFGWLCCLILAD 1257

  Fly   263 SFLSLLLCLYLEKIRPGPYGVPQPWHFPCT--------RCCSTESLLPYSRLFNRIFGIYSAAPD 319
            ||:...:..|:..:.||.||:..||:||..        .|...:.......:|..|. :.|..|.
  Rat  1258 SFIYFFIAWYVRNVFPGTYGMAAPWYFPVLPSYWKERFGCAEVKHEKSNGLMFTNIM-MQSTNPS 1321

  Fly   320 EER--PDLQL---IEPDPVDKIAGVQIRGLSKTFGKMEVVKNVSFDMFEGQITVLMGHNGAGKTT 379
            ..:  ||...   |||:|.|...||.:.|::|::|....|.|::.:.:||.||.|:|.|||||||
  Rat  1322 ANKTSPDCAFPSNIEPEPKDLQVGVALHGVTKSYGSKTAVDNLNLNFYEGHITSLLGPNGAGKTT 1386

  Fly   380 LISMLAGFISPTSGTALINGFDIRQERRQAQRCIGLCPQQNVLFKHLSSVSHIQLFSRLR--GLR 442
            .||||.|....|:||..:.|.||:.:....::.:|:|.|.:|||.:|::..|:.|:..::  ...
  Rat  1387 TISMLTGLFGATAGTIFVYGKDIKTDLNTVRKNMGVCMQHDVLFSYLTTKEHLLLYGSIKVPHWT 1451

  Fly   443 GAEVKSEVQNYLKKLNLQEKKRLAARNLSGGTQRRLSVACSLCGGVKVLICDEPSTGLDPSARRE 507
            ..::..||:..||...|...:......||||.:|:||::.:|.||.:|:|.||||||:||.:||.
  Rat  1452 KKQLHEEVKRTLKDTGLYSHRHKRVGTLSGGMKRKLSISIALIGGSRVVILDEPSTGVDPCSRRS 1516

  Fly   508 LWRLILEAKEGCTILLTTHQLDDGEVLGDRVVIISDGQLRCIGSLPFLKKQVDASCLITCEARKR 572
            :|.:|.:.|...||:|:||.||:.|||.||:..:..|.|||.||..:||:.......:|...:|.
  Rat  1517 IWDVISKNKTARTIILSTHHLDEAEVLSDRIAFLEQGGLRCCGSPFYLKEAFGDGYHLTLTKKKS 1581

  Fly   573 --------CDLEKLTSLISRHVGTIQPFSIKGRDVCYKLPLSKSKY---FSSLFRDLESQMNILG 626
                    ||...:|::|..|:.........|.::.|.||...:|.   :.||.|.|:..|..|.
  Rat  1582 PNLDTNAICDTVAVTAMIQSHLPEAYLKEDIGGELVYVLPPFSTKVSGAYLSLLRALDKGMGKLN 1646

  Fly   627 VRGFSLSSVSLEEIFM----------SFGAEDLNSRQSG-----GAEKRDD--------DDRDDD 668
            :..:.:|..::||:|:          :...|.|..|:.|     |....||        .||||.
  Rat  1647 IGCYGISDTTVEEVFLNLTKDSQKCGNMSLEHLTQRKVGNPSANGTSTPDDLSVSSSNFTDRDDK 1711

  Fly   669 --EENEVQDG--------------NVRSCKKQWRAMMTKKVM------------ALYDNKVYFLL 705
              ..:|..||              .....::.|:.::.:.|:            .|.|:...:..
  Rat  1712 VLTRSERLDGFGLLLKKIMAILIKRFHHTRRNWKGLIAQVVLPIVFVATAMGLGTLRDSSNSYPE 1776

  Fly   706 LLLTPIVY--------YI-------------------------TTLMMATKPHHSGRPTFNISDY 737
            ||::|.:|        |.                         |:.....|..:.|:  :|.|..
  Rat  1777 LLISPSIYGNSEQTAFYANFDPSTNALVSALWNFPGIDNVCLNTSDSQCLKKDNLGK--WNTSGE 1839

  Fly   738 GVDKFTIL-------------LSVPVSKSYTEERRADSIASLIKGKLKLIVVSEQIKDYVDDK-- 787
            .:|.|.:.             .|.|..::|:.:     :...:.||.....:......:|..:  
  Rat  1840 AIDNFGVCSCSDNVQECPKFNYSPPHRRTYSSQ-----VIYNLTGKHMENYLISTANHFVQKRYG 1899

  Fly   788 -WK-SREGRREINFVSMAIDTGDRTGLIGWVGPRHYVHAAPMILNLVYNALAQ----ELIGPKIS 846
             |. ..:...::.|...|:.. :||....|..|..| |:.|..||.:.|.|.:    |....:..
  Rat  1900 GWSFGMKLTNDLRFDVTAVPV-NRTLAKVWYDPEGY-HSLPAYLNSLNNFLLRVNMSEYDAARHG 1962

  Fly   847 IEVTSVPFT-LRKKEDFLISNNGDIPI---YVIGYVSIAMIIFSSAVIQERVSHMKMLQEVSGLE 907
            |.:.|.|:. ::.:|...||:..||.:   .::|| |:....|.:.:::|..:..|.||.:||:.
  Rat  1963 IIMYSHPYPGVQDQEQATISSLIDILVALSILMGY-SVTTASFVTYIVREHQTKAKQLQHISGIG 2026

  Fly   908 MITYWLSHLAFDMVVFFILV-----------------------LALLLPLYGYA--PWYLLLCVL 947
            :..||:::..:|||.:.:.|                       ::|||.|:|||  .|..||..|
  Rat  2027 VTCYWVTNFIYDMVFYLVPVAFSIGVIAIFKLPAFYSGNNLGAVSLLLLLFGYATFSWMYLLAGL 2091

  Fly   948 FF-TGLAGLIFI----YFLISMLSATFLAVSMILLSVIIG-----------SLILMILGALALIF 996
            |. ||:|.:.::    :|.|:         |::.|||:..           .||...|..:.|||
  Rat  2092 FHETGMAFITYVCVNLFFGIN---------SIVSLSVVYFLSKEKPNDPTLELISETLKRIFLIF 2147

  Fly   997 KMVYVAIYVANMHPLIAGYNCIQKCFHYMSLCGSYISEAQNPL-----------SENLTSDEMYC 1050
            .                     |.||.|..:   .:|:.|..|           ||....|::..
  Rat  2148 P---------------------QFCFGYGLI---ELSQQQAVLDFLKAYGVDYPSETFEMDKLGA 2188

  Fly  1051 INPLAFLEPRCVCVNPMTWPDMLVMLGTAIILFLLI----------MFFEYGSCVWYRCKGCCPY 1105
            :    |:              .||..||...|..|:          :||.             .:
  Rat  2189 M----FV--------------ALVSQGTMFFLLRLLINEWLIKKLRLFFR-------------KF 2222

  Fly  1106 SSKGSI----EDPKVSREAEKIRA----MDADQIGTRALVVNGVSKKYGCDQLAVNNISFALKPS 1162
            :|...:    ||..|..|..::.:    .|..|:.........:.||.    :||||||..:...
  Rat  2223 TSSPVMETVDEDEDVHTERLRVESGAAEFDLVQLHRLTKTYQLIHKKI----IAVNNISLGIPAG 2283

  Fly  1163 HCVGLLGPNGAGKTTTFKMIVGEHSIDKGNIYISGYSMRMKRNKA---------MKELGYCPQSD 1218
            .|.||||.|||||||.|||:.|:.....|||.|        |||:         ...:|||||.|
  Rat  2284 ECFGLLGVNGAGKTTIFKMLTGDIIPSSGNILI--------RNKSGSLGHVDSHSSLVGYCPQED 2340

  Fly  1219 SFFEFLTGRQLLKVFLLIWGFPSKDLNKRCEKLADQFGFRKHLDKKITYYSGGTKRKINAAVA-C 1282
            :..:.:|..:.|..:..:.|.|.||:.:...||..:.....:.|:..:..|.|||||::.|:| .
  Rat  2341 ALDDLVTVEEHLYFYARVHGIPEKDIKETVHKLLRRLHLMAYKDRSTSMCSYGTKRKLSTALALI 2405

  Fly  1283 GANSLICLDEPSAGVDPASRRHVWTIINEVAQQGKAVLLTSHNMDEINALCSKSVILVDGSIYAM 1347
            |..|::.|||||:|:||.|:||:|.||:|..|...:|:||||:|:|..|||::..|:|:|....:
  Rat  2406 GKPSILLLDEPSSGMDPKSKRHLWRIISEEVQNKCSVILTSHSMEECEALCTRLAIMVNGRFQCI 2470

  Fly  1348 GSVQHVKNKIAKGMTLKLVVNVQPDNMVAM--LTKIEDDIYMTYPNAELKEKYEFSGRLTFQISK 1410
            ||:||:|::..:|.|:|:.:.   :|.|:|  |||.   :.:.:|...||:::  ...|.:.:..
  Rat  2471 GSLQHIKSRFGRGFTVKVHLK---NNKVSMENLTKF---MQLHFPKTYLKDQH--LSMLEYHVPV 2527

  Fly  1411 DTSW-SEIFEYVEGNRSSWHLEDYSLSQPSLEDAFEEIAEERR 1452
            .... :.||:.:|.|:::.::.::.:||.:||:.|...|::::
  Rat  2528 TAGGVANIFDLLETNKTALNITNFLVSQTTLEEVFINFAKDQK 2570

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG42816NP_730301.3 CcmA 336..643 CDD:224054 112/329 (34%)
ABC_subfamily_A 339..556 CDD:213230 87/218 (40%)
ABC2_membrane_3 <821..1018 CDD:289468 59/245 (24%)
CcmA 1135..1450 CDD:224054 113/327 (35%)
ABC_subfamily_A 1136..1354 CDD:213230 89/227 (39%)
Abca12XP_237242.6 ABC2_membrane_3 <1006..1267 CDD:289468 66/268 (25%)
NosY <1108..1269 CDD:224196 43/170 (25%)
ZnuC 1346..1570 CDD:224046 89/223 (40%)
ABC_subfamily_A 1350..1565 CDD:213230 86/214 (40%)
ABC2_membrane_3 <1913..2174 CDD:289468 72/296 (24%)
CcmA 2253..2567 CDD:224054 113/333 (34%)
ABC_subfamily_A 2254..2477 CDD:213230 90/234 (38%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E2759_KOG0059
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D131191at2759
OrthoFinder 1 1.000 - - FOG0000051
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 1 0.900 - - OOG6_100045
Panther 1 1.100 - - O PTHR19229
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
76.820

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