DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG42816 and Abca16

DIOPT Version :10

Sequence 1:NP_730301.3 Gene:CG42816 / 39977 FlyBaseID:FBgn0261998 Length:1459 Species:Drosophila melanogaster
Sequence 2:XP_038957107.1 Gene:Abca16 / 293444 RGDID:1563534 Length:1680 Species:Rattus norvegicus


Alignment Length:1588 Identity:467/1588 - (29%)
Similarity:762/1588 - (47%) Gaps:240/1588 - (15%)


- Green bases have known domain annotations that are detailed below.


  Fly     2 YLADGSYPLYKTGFLAVQQALSQ-VHIKHKCKEFNKTQGDI-----KFPPIKDLPSPPIFKSDNS 60
            ||..||....|.||||||.|:.: :.:.|:.:...:...:|     :||    .||.|   .|..
  Rat   188 YLDGGSPGYIKEGFLAVQHAVDKSIMLYHESRAGKELFENIDTLVQRFP----YPSHP---QDKL 245

  Fly    61 STLQDVGIMIIVIIIF-FVVVSLTKSIVEEKELQLKVTLNLMGVGSCLQWVAWYIQTF-----II 119
            ..:....|.::.|::| .:|:|:.:|||.|||.:||....:||:.:.:.|:.::...|     ||
  Rat   246 LWISSPFIPLMFILMFSSIVLSIMRSIVFEKEKRLKEYQLIMGLRNWIIWMGYFFTFFPLYVAII 310

  Fly   120 FLIGSSIITLFWKLV----LPNSEISFMPFTHWSMALFVLLV-LSHCTICFSFLMSSLISTTYRI 179
            |||   .|.||.::|    |..|:.||         :||.|. .:..:|||:|::|:..|.|...
  Rat   311 FLI---CILLFIQIVEEPILRYSDCSF---------IFVFLTCYAIASICFAFMVSTFFSKTRLA 363

  Fly   180 SLVTFLALIATYLPF---------LILHSK--GCSEGLNVFLSLFLLSGLQVLVVGICMWEDYGE 233
            :....|...|::.|:         |.|.:|  .|... ||.|:|    |:.:|:    ..|....
  Rat   364 ASAGNLLFFASFFPYNFISEYYGMLDLTTKITACLSA-NVALAL----GINILI----KLEIQEI 419

  Fly   234 GLQWGNLFETSWPGGTLSVGYILLVMILASFLSLLLCLYLEKIRPGPYGVPQPWHFPCTRCCSTE 298
            |::|.||:..:.....|:.||:|.:::|.:||..|:..|:|.:.||..||||||:|...|     
  Rat   420 GVKWDNLWTPANLEDNLNFGYMLGMLLLDAFLYSLVTWYVEAVFPGQCGVPQPWYFFIMR----- 479

  Fly   299 SLLPYSRLFN----RIFGIYSAAPDEERPDLQLI----EPDPVDKIAGVQIRGLSKTFGKMEVVK 355
                 |..|.    |..|       ||...:.::    |.:|.:..||:||:.|.|.|.....:.
  Rat   480 -----SYWFGKPKIRKIG-------EEAKSIPVVHNCYEAEPSNLEAGIQIKHLHKEFKTKPAIN 532

  Fly   356 NVSFDMFEGQITVLMGHNGAGKTTLISMLAGFISPTSGTALINGFDIRQERRQAQRCIGLCPQQN 420
            |:|.:::|||:|||:|||||||||.:|:|.|..:.|.|.|.|||::|.....:.::.:|.|||.:
  Rat   533 NLSLNIYEGQVTVLLGHNGAGKTTTLSVLTGRFAATRGEAYINGYNISDNMAEIRKDLGFCPQHD 597

  Fly   421 VLFKHLSSVSHIQLFSRLRGLRGAEVKSEVQNYLKKLNLQEKKRLAARNLSGGTQRRLSVACSLC 485
            :||..|:...|:..:..::|........|:...|...||||.....:.::|||.:|:||:..:|.
  Rat   598 LLFDDLTLSEHLFFYCMIKGHPQNINCVEINRMLSVFNLQENYHTLSGSVSGGVRRKLSIILALM 662

  Fly   486 GGVKVLICDEPSTGLDPSARRELWRLILEAKEGCTILLTTHQLDDGEVLGDRVVIISDGQLRCIG 550
            ||.||:|.||||:|:||.:||..|.::...|:..|||||||.:|:.:|||||:.|:..|.|.|.|
  Rat   663 GGSKVVILDEPSSGMDPMSRRATWDILQHYKQNRTILLTTHYMDEADVLGDRIAIMVRGTLHCCG 727

  Fly   551 SLPFLKKQVDASCLITCEARKRCDLEKLTSLISRHV-GTIQPFSIKGRDVCYKLPLSKSKYFSSL 614
            |..|||:...|...|..|....||::.:.::|.:|| |::....| |.::.:.||......|.:|
  Rat   728 SSVFLKQIYGAGYHIVLEKEPYCDVDNIIAMIQQHVPGSMLENDI-GNELSFILPKKYVSRFETL 791

  Fly   615 FRDLESQMNILGVRGFSLSSVSLEEIFMSFGAEDLNSRQSGGAEKRDDDD-----------RDDD 668
            |.:||.:...||:..|..|..::||:|:.     :|..   .|.:|....           |.|:
  Rat   792 FTELEMRQKALGIANFGASITTMEEVFLK-----VNKL---AAPQRSIQTIQPYYLTYKKMRQDE 848

  Fly   669 EEN----------------EVQ----DGNVRSCKKQWRAMMTKKVMALYDNKVYFLLLLLTPIVY 713
            ::|                |:.    :..|...::|:.:|..|:  ||:..:.:.|:.|...:|.
  Rat   849 QQNVNILRNYNKPIFPYLREIATVKFNTGVPLYRQQFYSMFIKR--ALFIGRNWKLMFLQIIVVL 911

  Fly   714 YITT-LMMATKPHHSGRP--TFNISDYGVDKFTILLSVPVSKSYTEERRADSIASLIKGKLKLIV 775
            .:|| |:::.....:..|  ..|:|.||.   ||   ||    |:....:|...:||| .||:.:
  Rat   912 VVTTYLLLSLHLDDNDIPERELNLSHYGK---TI---VP----YSISGNSDLALNLIK-NLKIFL 965

  Fly   776 VS-----EQIKDYVDDKWKSREGRREINFVSMAIDT-GDRTGLIGWVGPRHYVHAAPMILNLVYN 834
            .|     ::||..:::.....:..|....::::|.. .::|.|..:.....| |:..:.|:::.|
  Rat   966 KSKNQSLKKIKGDMNNYILENKDCRTFCIIALSIKVERNKTVLTIFFNNEAY-HSPAISLSILDN 1029

  Fly   835 ALAQELIGPKISIEVTSVPFTLRKKEDFLISNNGDIPIYVIGY-VSIAMIIFSSAVIQERVSHMK 898
            .|...|.|...||...:.|..|.......:..||...:..:.: :|:.:..||...:.||:|..|
  Rat  1030 ILFMTLSGRDASITAFNKPQPLPHYGSNTVPVNGLQIVQCLAFGISVVVGSFSIQTVTERISQAK 1094

  Fly   899 MLQEVSGLEMITYWLSHLAFDMVVFF-----------------------ILVLALLLPLYGYAPW 940
            .:|.::|:.::|||||.|..|::.||                       .|...|:..|||:   
  Rat  1095 HIQFLTGVCVLTYWLSALLCDLIFFFFACCVLLGIFRFCQLEAFVVHYNFLDTILIFMLYGW--- 1156

  Fly   941 YLLLCVLFFTGLAGLIFIYFLISMLSATFLAVSMI-----LLSVIIGSLILMILGALALIFKMVY 1000
                ||:..|.|..     ||.:..:|.::.:::.     :.|:||.:::            ..|
  Rat  1157 ----CVVPLTYLGS-----FLFNSSTAAYIKITLFNYFSTMFSIIIYTIV------------QFY 1200

  Fly  1001 VAIYVANMHPLI-------AGYNCIQKCFHYMSLCGSYISEAQNPLSENLTSDEMYCINPLAFLE 1058
            ...:.|.:|.||       ..||.......|..   .|  |.:...:....|..|.|..|  |::
  Rat  1201 GEDFPALIHILIKTILMALPSYNLAMSISKYFD---DY--EVKRLCAREFRSIYMDCSEP--FIQ 1258

  Fly  1059 PRCVCVNPMTWPDMLVMLGTAIILFLLIMF-----------FEYGSCVWYRC----KGCCPYSSK 1108
            ..............|:.|.|..::|||::.           |.:.:.::|..    ||.....||
  Rat  1259 NNVYGFGEHGIGKFLITLATMGLVFLLLLLSLESVSSSLKNFVFRNVLFYFYNKIRKGRHGVHSK 1323

  Fly  1109 GS--IEDPKVSREAEKIRAMDADQIGTRALVVNGVSKKY-GCDQL-AVNNISFALKPSHCVGLLG 1169
            .:  .||..:.:|..|:..: ..::....||:|.|:|.| .|..: ||.|||..::.|.|.||||
  Rat  1324 STKEDEDEDIRKEKRKVFTL-LLRLQNTPLVLNEVTKIYFKCPVVKAVKNISLVVRKSECFGLLG 1387

  Fly  1170 PNGAGKTTTFKMIVGEHSIDKGNIYISGYSMRMKRNKAMKELGYCPQSDSFFEFLTGRQLLKVFL 1234
            .|||||||||||:.||.:|..|..:|.|.|:.....|....:||||||:|....:|||:.|.::.
  Rat  1388 LNGAGKTTTFKMLTGEETITSGIAFIDGNSVTKNPRKIRSRIGYCPQSESVLNHMTGRESLIMYA 1452

  Fly  1235 LIWGFPSKDLNKRCEKLADQFGFRKHLDKKITYYSGGTKRKINAAVA-CGANSLICLDEPSAGVD 1298
            .:||.|.:|:|:..|............|:.|..||.|:||:::.|:| .|.:|::.|||||.|:|
  Rat  1453 RLWGVPEQDINEYVEAFLHSVHLEPIADQIIYTYSAGSKRRLSTAIALMGKSSVVFLDEPSTGMD 1517

  Fly  1299 PASRRHVWTIINEVAQQGKAVLLTSHNMDEINALCSKSVILVDGSIYAMGSVQHVKNKIAKGMTL 1363
            |.::..:|..:..|.:.|||:::|||.|:|..||||:..|:|.|....:|:.|||:.:..:..||
  Rat  1518 PVAQHLLWDTVTWVCKTGKAIIITSHRMEECEALCSRLAIMVKGKFTCLGTPQHVRKRFGQVYTL 1582

  Fly  1364 KLVVNVQPDNMVAMLTKIEDDIYMTYP-NAELKEKYEFSGRLTFQI-SKDTSWSEIFEYVEGNRS 1426
            .:.:|:..|.  ..:.:.:|.|..|:| |.:.:   ||.|.:.:.| |.:..|.::||.:|..:.
  Rat  1583 TVKINIAKDE--EKVKEFKDFIKSTFPGNIKFQ---EFHGTIGYYIPSTEICWGKVFEILEEAKV 1642

  Fly  1427 SWHLEDYSLSQPSLEDAFEEIAEERRKK 1454
            .:.|||||:.|.:||..|...|...:.|
  Rat  1643 LFKLEDYSVKQVTLEQIFLTFANTDKMK 1670

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG42816NP_730301.3 rim_protein <81..1451 CDD:130324 442/1497 (30%)
Abca16XP_038957107.1 rim_protein <163..1664 CDD:130324 465/1580 (29%)

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