DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG42816 and Abca16

DIOPT Version :9

Sequence 1:NP_730301.3 Gene:CG42816 / 39977 FlyBaseID:FBgn0261998 Length:1459 Species:Drosophila melanogaster
Sequence 2:XP_038957107.1 Gene:Abca16 / 293444 RGDID:1563534 Length:1680 Species:Rattus norvegicus


Alignment Length:1588 Identity:467/1588 - (29%)
Similarity:762/1588 - (47%) Gaps:240/1588 - (15%)


- Green bases have known domain annotations that are detailed below.


  Fly     2 YLADGSYPLYKTGFLAVQQALSQ-VHIKHKCKEFNKTQGDI-----KFPPIKDLPSPPIFKSDNS 60
            ||..||....|.||||||.|:.: :.:.|:.:...:...:|     :||    .||.|   .|..
  Rat   188 YLDGGSPGYIKEGFLAVQHAVDKSIMLYHESRAGKELFENIDTLVQRFP----YPSHP---QDKL 245

  Fly    61 STLQDVGIMIIVIIIF-FVVVSLTKSIVEEKELQLKVTLNLMGVGSCLQWVAWYIQTF-----II 119
            ..:....|.::.|::| .:|:|:.:|||.|||.:||....:||:.:.:.|:.::...|     ||
  Rat   246 LWISSPFIPLMFILMFSSIVLSIMRSIVFEKEKRLKEYQLIMGLRNWIIWMGYFFTFFPLYVAII 310

  Fly   120 FLIGSSIITLFWKLV----LPNSEISFMPFTHWSMALFVLLV-LSHCTICFSFLMSSLISTTYRI 179
            |||   .|.||.::|    |..|:.||         :||.|. .:..:|||:|::|:..|.|...
  Rat   311 FLI---CILLFIQIVEEPILRYSDCSF---------IFVFLTCYAIASICFAFMVSTFFSKTRLA 363

  Fly   180 SLVTFLALIATYLPF---------LILHSK--GCSEGLNVFLSLFLLSGLQVLVVGICMWEDYGE 233
            :....|...|::.|:         |.|.:|  .|... ||.|:|    |:.:|:    ..|....
  Rat   364 ASAGNLLFFASFFPYNFISEYYGMLDLTTKITACLSA-NVALAL----GINILI----KLEIQEI 419

  Fly   234 GLQWGNLFETSWPGGTLSVGYILLVMILASFLSLLLCLYLEKIRPGPYGVPQPWHFPCTRCCSTE 298
            |::|.||:..:.....|:.||:|.:::|.:||..|:..|:|.:.||..||||||:|...|     
  Rat   420 GVKWDNLWTPANLEDNLNFGYMLGMLLLDAFLYSLVTWYVEAVFPGQCGVPQPWYFFIMR----- 479

  Fly   299 SLLPYSRLFN----RIFGIYSAAPDEERPDLQLI----EPDPVDKIAGVQIRGLSKTFGKMEVVK 355
                 |..|.    |..|       ||...:.::    |.:|.:..||:||:.|.|.|.....:.
  Rat   480 -----SYWFGKPKIRKIG-------EEAKSIPVVHNCYEAEPSNLEAGIQIKHLHKEFKTKPAIN 532

  Fly   356 NVSFDMFEGQITVLMGHNGAGKTTLISMLAGFISPTSGTALINGFDIRQERRQAQRCIGLCPQQN 420
            |:|.:::|||:|||:|||||||||.:|:|.|..:.|.|.|.|||::|.....:.::.:|.|||.:
  Rat   533 NLSLNIYEGQVTVLLGHNGAGKTTTLSVLTGRFAATRGEAYINGYNISDNMAEIRKDLGFCPQHD 597

  Fly   421 VLFKHLSSVSHIQLFSRLRGLRGAEVKSEVQNYLKKLNLQEKKRLAARNLSGGTQRRLSVACSLC 485
            :||..|:...|:..:..::|........|:...|...||||.....:.::|||.:|:||:..:|.
  Rat   598 LLFDDLTLSEHLFFYCMIKGHPQNINCVEINRMLSVFNLQENYHTLSGSVSGGVRRKLSIILALM 662

  Fly   486 GGVKVLICDEPSTGLDPSARRELWRLILEAKEGCTILLTTHQLDDGEVLGDRVVIISDGQLRCIG 550
            ||.||:|.||||:|:||.:||..|.::...|:..|||||||.:|:.:|||||:.|:..|.|.|.|
  Rat   663 GGSKVVILDEPSSGMDPMSRRATWDILQHYKQNRTILLTTHYMDEADVLGDRIAIMVRGTLHCCG 727

  Fly   551 SLPFLKKQVDASCLITCEARKRCDLEKLTSLISRHV-GTIQPFSIKGRDVCYKLPLSKSKYFSSL 614
            |..|||:...|...|..|....||::.:.::|.:|| |::....| |.::.:.||......|.:|
  Rat   728 SSVFLKQIYGAGYHIVLEKEPYCDVDNIIAMIQQHVPGSMLENDI-GNELSFILPKKYVSRFETL 791

  Fly   615 FRDLESQMNILGVRGFSLSSVSLEEIFMSFGAEDLNSRQSGGAEKRDDDD-----------RDDD 668
            |.:||.:...||:..|..|..::||:|:.     :|..   .|.:|....           |.|:
  Rat   792 FTELEMRQKALGIANFGASITTMEEVFLK-----VNKL---AAPQRSIQTIQPYYLTYKKMRQDE 848

  Fly   669 EEN----------------EVQ----DGNVRSCKKQWRAMMTKKVMALYDNKVYFLLLLLTPIVY 713
            ::|                |:.    :..|...::|:.:|..|:  ||:..:.:.|:.|...:|.
  Rat   849 QQNVNILRNYNKPIFPYLREIATVKFNTGVPLYRQQFYSMFIKR--ALFIGRNWKLMFLQIIVVL 911

  Fly   714 YITT-LMMATKPHHSGRP--TFNISDYGVDKFTILLSVPVSKSYTEERRADSIASLIKGKLKLIV 775
            .:|| |:::.....:..|  ..|:|.||.   ||   ||    |:....:|...:||| .||:.:
  Rat   912 VVTTYLLLSLHLDDNDIPERELNLSHYGK---TI---VP----YSISGNSDLALNLIK-NLKIFL 965

  Fly   776 VS-----EQIKDYVDDKWKSREGRREINFVSMAIDT-GDRTGLIGWVGPRHYVHAAPMILNLVYN 834
            .|     ::||..:::.....:..|....::::|.. .::|.|..:.....| |:..:.|:::.|
  Rat   966 KSKNQSLKKIKGDMNNYILENKDCRTFCIIALSIKVERNKTVLTIFFNNEAY-HSPAISLSILDN 1029

  Fly   835 ALAQELIGPKISIEVTSVPFTLRKKEDFLISNNGDIPIYVIGY-VSIAMIIFSSAVIQERVSHMK 898
            .|...|.|...||...:.|..|.......:..||...:..:.: :|:.:..||...:.||:|..|
  Rat  1030 ILFMTLSGRDASITAFNKPQPLPHYGSNTVPVNGLQIVQCLAFGISVVVGSFSIQTVTERISQAK 1094

  Fly   899 MLQEVSGLEMITYWLSHLAFDMVVFF-----------------------ILVLALLLPLYGYAPW 940
            .:|.::|:.::|||||.|..|::.||                       .|...|:..|||:   
  Rat  1095 HIQFLTGVCVLTYWLSALLCDLIFFFFACCVLLGIFRFCQLEAFVVHYNFLDTILIFMLYGW--- 1156

  Fly   941 YLLLCVLFFTGLAGLIFIYFLISMLSATFLAVSMI-----LLSVIIGSLILMILGALALIFKMVY 1000
                ||:..|.|..     ||.:..:|.::.:::.     :.|:||.:::            ..|
  Rat  1157 ----CVVPLTYLGS-----FLFNSSTAAYIKITLFNYFSTMFSIIIYTIV------------QFY 1200

  Fly  1001 VAIYVANMHPLI-------AGYNCIQKCFHYMSLCGSYISEAQNPLSENLTSDEMYCINPLAFLE 1058
            ...:.|.:|.||       ..||.......|..   .|  |.:...:....|..|.|..|  |::
  Rat  1201 GEDFPALIHILIKTILMALPSYNLAMSISKYFD---DY--EVKRLCAREFRSIYMDCSEP--FIQ 1258

  Fly  1059 PRCVCVNPMTWPDMLVMLGTAIILFLLIMF-----------FEYGSCVWYRC----KGCCPYSSK 1108
            ..............|:.|.|..::|||::.           |.:.:.::|..    ||.....||
  Rat  1259 NNVYGFGEHGIGKFLITLATMGLVFLLLLLSLESVSSSLKNFVFRNVLFYFYNKIRKGRHGVHSK 1323

  Fly  1109 GS--IEDPKVSREAEKIRAMDADQIGTRALVVNGVSKKY-GCDQL-AVNNISFALKPSHCVGLLG 1169
            .:  .||..:.:|..|:..: ..::....||:|.|:|.| .|..: ||.|||..::.|.|.||||
  Rat  1324 STKEDEDEDIRKEKRKVFTL-LLRLQNTPLVLNEVTKIYFKCPVVKAVKNISLVVRKSECFGLLG 1387

  Fly  1170 PNGAGKTTTFKMIVGEHSIDKGNIYISGYSMRMKRNKAMKELGYCPQSDSFFEFLTGRQLLKVFL 1234
            .|||||||||||:.||.:|..|..:|.|.|:.....|....:||||||:|....:|||:.|.::.
  Rat  1388 LNGAGKTTTFKMLTGEETITSGIAFIDGNSVTKNPRKIRSRIGYCPQSESVLNHMTGRESLIMYA 1452

  Fly  1235 LIWGFPSKDLNKRCEKLADQFGFRKHLDKKITYYSGGTKRKINAAVA-CGANSLICLDEPSAGVD 1298
            .:||.|.:|:|:..|............|:.|..||.|:||:::.|:| .|.:|::.|||||.|:|
  Rat  1453 RLWGVPEQDINEYVEAFLHSVHLEPIADQIIYTYSAGSKRRLSTAIALMGKSSVVFLDEPSTGMD 1517

  Fly  1299 PASRRHVWTIINEVAQQGKAVLLTSHNMDEINALCSKSVILVDGSIYAMGSVQHVKNKIAKGMTL 1363
            |.::..:|..:..|.:.|||:::|||.|:|..||||:..|:|.|....:|:.|||:.:..:..||
  Rat  1518 PVAQHLLWDTVTWVCKTGKAIIITSHRMEECEALCSRLAIMVKGKFTCLGTPQHVRKRFGQVYTL 1582

  Fly  1364 KLVVNVQPDNMVAMLTKIEDDIYMTYP-NAELKEKYEFSGRLTFQI-SKDTSWSEIFEYVEGNRS 1426
            .:.:|:..|.  ..:.:.:|.|..|:| |.:.:   ||.|.:.:.| |.:..|.::||.:|..:.
  Rat  1583 TVKINIAKDE--EKVKEFKDFIKSTFPGNIKFQ---EFHGTIGYYIPSTEICWGKVFEILEEAKV 1642

  Fly  1427 SWHLEDYSLSQPSLEDAFEEIAEERRKK 1454
            .:.|||||:.|.:||..|...|...:.|
  Rat  1643 LFKLEDYSVKQVTLEQIFLTFANTDKMK 1670

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG42816NP_730301.3 CcmA 336..643 CDD:224054 119/307 (39%)
ABC_subfamily_A 339..556 CDD:213230 90/216 (42%)
ABC2_membrane_3 <821..1018 CDD:289468 53/232 (23%)
CcmA 1135..1450 CDD:224054 122/319 (38%)
ABC_subfamily_A 1136..1354 CDD:213230 93/220 (42%)
Abca16XP_038957107.1 rim_protein <163..1664 CDD:130324 465/1580 (29%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 1 1.010 - - QHG53524
OrthoDB 1 1.010 - - D131191at2759
OrthoFinder 1 1.000 - - FOG0000051
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 1 0.900 - - OOG6_100045
Panther 1 1.100 - - O PTHR19229
Phylome 1 0.910 - -
SonicParanoid 1 1.000 - - X215
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
87.930

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