DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG42816 and Abca3

DIOPT Version :9

Sequence 1:NP_730301.3 Gene:CG42816 / 39977 FlyBaseID:FBgn0261998 Length:1459 Species:Drosophila melanogaster
Sequence 2:NP_001034670.1 Gene:Abca3 / 27410 MGIID:1351617 Length:1704 Species:Mus musculus


Alignment Length:1592 Identity:457/1592 - (28%)
Similarity:763/1592 - (47%) Gaps:246/1592 - (15%)


- Green bases have known domain annotations that are detailed below.


  Fly     5 DGSYPLY-KTGFLAVQQALSQVHIKHKCKEFNKTQGDIKFPPI----KDLPSPPIFKSDNSSTLQ 64
            ||..|.| :.||||:|.|:.:..:::..    .|.....|..:    |..|.||.........:|
Mouse   200 DGGEPGYIREGFLAMQHAVDKAIMRYHA----NTSAQQLFQKLMVITKRFPFPPYISDPFLIAIQ 260

  Fly    65 DVGIMIIVIIIFFVVVSLTKSIVEEKELQLKVTLNLMGVGSCLQWVAWYIQTFIIFLIGSSIITL 129
            ....:::::...:..:::.:::|:|||.:||..:.:||:.|.|.|.||::..|:.|||..|.:||
Mouse   261 YQLPLLLMLSFTYTSLTIIRAVVQEKEKKLKEYMRMMGLNSWLHWSAWFLMFFLFFLIVVSFMTL 325

  Fly   130 FWKLVLPNSEISFMPFTHWSMALFVLLVLSHCTICFSFLMSSLISTTYRISLVTFLALIATYLPF 194
            .: .|....:|:.:..:..|:.|..||..:..:|.|||::|:..|.....:.|.......||.|:
Mouse   326 LF-CVKVKKDIAVLSNSDPSLVLAFLLCFAISSISFSFMVSTFFSKANIAAAVGGFLYFFTYTPY 389

  Fly   195 LILHSKGCSEGLNVFLSLFLLSGLQVLVVG---ICMWEDYGEGLQWGNLFETSWPGGTLSVGYIL 256
            ..:..:.....|:..|...|||.: .:.:|   |..:|..|.|:||.:|............|.:|
Mouse   390 FFVAPRYNWMTLSQKLLSCLLSNV-AMAMGAQLIGKFEAKGTGIQWRDLLNPVNVDDNFCFGQVL 453

  Fly   257 LVMILASFLSLLLCLYLEKIRPGPYGVPQPWHF---PCTRCCSTESLL--------PYSRLFNRI 310
            .:::|.|.|..|:..|:|.:.||.:||||||||   |...|.:..:::        |...|.|..
Mouse   454 GMLLLDSALYGLVTWYVEAVFPGQFGVPQPWHFFLMPSYWCGNPRTVVGKEEEGSDPEKALRNEY 518

  Fly   311 FGIYSAAPDEERPDLQLIEPDPVDKIAGVQIRGLSKTF-----GKMEVVKNVSFDMFEGQITVLM 370
            |                 |.:|.|.:||::|:.|||.|     .||. :::::.:::|||||||:
Mouse   519 F-----------------EAEPEDLVAGIKIKHLSKVFQVGNKDKMG-IRDLTLNLYEGQITVLL 565

  Fly   371 GHNGAGKTTLISMLAGFISPTSGTALINGFDIRQERRQAQRCIGLCPQQNVLFKHLSSVSHIQLF 435
            |||||||||.:|:|.|...||||.|.|:|::|.|:..|.::.:|||||.:|||.:|:...|:..:
Mouse   566 GHNGAGKTTTMSLLTGLFPPTSGHAYIHGYEISQDMAQIRKSLGLCPQHDVLFDNLTVAEHLYFY 630

  Fly   436 SRLRGLRGAEVKSEVQNYLKKLNLQEKKRLAARNLSGGTQRRLSVACSLCGGVKVLICDEPSTGL 500
            ::|:||...:...||:..|..|:|::|:.|.::.||||.:|:||:..:|..|.|||:.|||::|:
Mouse   631 AQLKGLSLQKCPEEVKQMLHILSLEDKRDLRSKFLSGGMKRKLSIGIALIAGSKVLMLDEPTSGM 695

  Fly   501 DPSARRELWRLILEAKEGCTILLTTHQLDDGEVLGDRVVIISDGQLRCIGSLPFLKKQVDASCLI 565
            |..:||.:|.|:.:.|...|:|||||.:|:.::||||:.|::.|:|:|.||..|||::..|...:
Mouse   696 DAVSRRAIWDLLQQQKSDRTVLLTTHFMDEADLLGDRIAILAKGELQCCGSSLFLKQKYGAGYHM 760

  Fly   566 TCEARKRCDLEKLTSLISRHVGTIQPFSIKGRDVCYKLPLSKSKYFSSLFRDLESQMNILGVRGF 630
            |......|:.|.::.|:..||......|..|.::.:.||...:..|.|||..||.:...||:..|
Mouse   761 TLVKEPHCNPEGISQLVHHHVPNAMLESHAGAELSFILPKESTHRFESLFAKLEKKQKELGIASF 825

  Fly   631 SLSSVSLEEIFMSFG-----AEDLNSRQSGGA----EKRDDDDRDDD----------------EE 670
            ..|..::||:|:..|     :.|:.:.|....    |:|..|...|.                ||
Mouse   826 GASVTTMEEVFLRVGKLVDTSMDIQAIQLPALQYQHERRASDWALDSNLCGVMDPTNGIGALIEE 890

  Fly   671 NEV----QDGNVRSCKKQWRAMMTKKVMALYDNKVYFLLL--LLTPIVYYITTLMMATKPHHSGR 729
            .||    ..|....|::.| ||..||  |.|..:.:.::.  :|.|    :|.|.:|....|...
Mouse   891 EEVLVKLNTGLALHCQQFW-AMFLKK--AAYSWREWKMVAAQVLVP----LTCLTLALLAIHYTS 948

  Fly   730 PTF-------NISDYGVDKFTILLSVPVSKSYTEERRADSIASLIKGKLKLIVVSEQIKDYVD-D 786
            ..|       ::::||  :..:..|||.:....::                  :||.::|.:. :
Mouse   949 EIFDDPLLKLSLNEYG--RTVVPFSVPGTSRLAQQ------------------LSENLRDMLQAE 993

  Fly   787 KWKSRE------------------GRREINFVSMAI-DTGDRTGLIGWVGPRHYVHAAPMILNLV 832
            :.:.||                  |..|...|:.:. |.|:.|.:......:.| |:....|.:|
Mouse   994 RQEPREVLGDLEEFLVFRASVEGGGFNERCLVATSFKDRGELTVVTALFNNQAY-HSPATALAIV 1057

  Fly   833 YNALAQELIGPKISIEVTSVP---FTLRKKEDFLISNNG----DIPIYVIGYVSIAMIIFSSAVI 890
            .|.|.:.|.||:.|||:::.|   .||:..:|..  |.|    ||.:.::..::.....||...:
Mouse  1058 DNLLFKLLCGPQASIEISNYPQPRNTLQVAKDHF--NEGRKGFDIALNLLIAMAFLASTFSILAV 1120

  Fly   891 QERVSHMKMLQEVSGLEMITYWLSHLAFDMVVFFI-----LV------------------LALLL 932
            .||....|.:|.|||:.:.|:|.|.|.:|::.|.:     ||                  |.|||
Mouse  1121 SERAVQAKHVQFVSGVHVATFWFSALLWDLISFLVPSLLLLVVFQAFNVHAFTRDGHMADLLLLL 1185

  Fly   933 PLYGYAPWYLLLCVLFFTGLAGLIFIYFLI-SMLS--ATFLAVSMILLSVIIGSLILMILGALAL 994
            .|||:|...|:..:.||...|...:....| ::||  |||:.|:::.:..:....:...|..:.|
Mouse  1186 MLYGWAIIPLMYLMSFFFSAASTAYTRLTIFNILSGIATFIMVTIMRIPAVKLEELSRTLDHVFL 1250

  Fly   995 IFKMVYVAIYVANMHPLIAGYNCIQKC------FHYMSLCGSYISEAQNPLSENLTSDEMYCINP 1053
            :.....:.:.|:|.:   ..|...:.|      .||   |..|          |:...|.:    
Mouse  1251 VLPNHCLGMAVSNFY---ENYETRRYCTSSELAAHY---CKKY----------NIQYQESF---- 1295

  Fly  1054 LAFLEPRCVCVNPMTWP-----DMLVMLGTAIILFLLIMFFEYGSCVWYRCKGCCPYSSKGSI-- 1111
                         ..|.     ..:..:..:..::|.::|....:.:|......|.:..:.::  
Mouse  1296 -------------YAWSTPGVGKFVTSMAASGGIYLTLLFLIETNLLWRLRTFICAFRRRWTLAE 1347

  Fly  1112 ---------EDPKVSREAEKIRAMDADQIGTRALVVNGVSKKYGCDQ----LAVNNISFALKPSH 1163
                     ||..|:.|..:|.....|.:....|::|.:||.|  ||    |||:.||.|::...
Mouse  1348 LQNRTSVLPEDQDVAEERSRILVPSLDSMLDTPLIINELSKVY--DQRAPLLAVDRISLAVQKGE 1410

  Fly  1164 CVGLLGPNGAGKTTTFKMIVGEHSIDKGNIYISGYSMRMKRNKAMKELGYCPQSDSFFEFLTGRQ 1228
            |.||||.|||||||||||:.||.:|..|:.::.|||:.....|..:.:|||||.|:..:.:|||:
Mouse  1411 CFGLLGFNGAGKTTTFKMLTGEETITSGDAFVGGYSISSDIGKVRQRMGYCPQFDALLDHMTGRE 1475

  Fly  1229 LLKVFLLIWGFPSKDLNKRCEKLADQFGFRKHLDKKITYYSGGTKRKINAAVA-CGANSLICLDE 1292
            :|.::..:.|.|.:.:|...|..........|.:|.:..||||.|||::..:| .|..::|.|||
Mouse  1476 MLVMYARLRGIPERLINACVENTLRGLLLEPHANKLVKTYSGGNKRKLSTGIALIGEPAVIFLDE 1540

  Fly  1293 PSAGVDPASRRHVWTIINEVAQQGKAVLLTSHNMDEINALCSKSVILVDGSIYAMGSVQHVKNKI 1357
            ||.|:||.:||.:|..:....:.|||:::|||:|:|..|||::..|:|.|....:||.||:|:|.
Mouse  1541 PSTGMDPVARRLLWDTVARARESGKAIVITSHSMEECEALCTRLAIMVQGQFKCLGSPQHLKSKF 1605

  Fly  1358 AKGMTLKLVVNVQPDNMVAMLTKIEDDIYMTYPNAELKEK------YEFSGRLTFQISKDTSWSE 1416
            ..|.:|:  ..|:.:.....|.:.:..:.:|:|.:.|:::      |...|       .|.||::
Mouse  1606 GSGYSLQ--AKVRSEGKQDALEEFKAFVDLTFPGSILEDEHQDMVHYHLPG-------CDLSWAK 1661

  Fly  1417 IFEYVEGNRSSWHLEDYSLSQPSLEDAFEEIA 1448
            :|..:|..:..:.::|||:||.|||..|...|
Mouse  1662 VFGILEKAKEKYGVDDYSVSQISLEQVFLSFA 1693

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG42816NP_730301.3 CcmA 336..643 CDD:224054 124/311 (40%)
ABC_subfamily_A 339..556 CDD:213230 96/221 (43%)
ABC2_membrane_3 <821..1018 CDD:289468 61/229 (27%)
CcmA 1135..1450 CDD:224054 118/325 (36%)
ABC_subfamily_A 1136..1354 CDD:213230 92/222 (41%)
Abca3NP_001034670.1 rim_protein 1..>43 CDD:130324
rim_protein <206..1699 CDD:130324 454/1586 (29%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 159 1.000 Domainoid score I4067
eggNOG 1 0.900 - - E2759_KOG0059
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 1 1.010 - - QHG53524
OrthoDB 1 1.010 - - D131191at2759
OrthoFinder 1 1.000 - - FOG0000051
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 1 0.900 - - OOG6_100045
Panther 1 1.100 - - O PTHR19229
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X215
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
98.830

Return to query results.
Submit another query.