DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG42816 and ABCA12

DIOPT Version :10

Sequence 1:NP_730301.3 Gene:CG42816 / 39977 FlyBaseID:FBgn0261998 Length:1459 Species:Drosophila melanogaster
Sequence 2:XP_011509253.1 Gene:ABCA12 / 26154 HGNCID:14637 Length:2598 Species:Homo sapiens


Alignment Length:434 Identity:92/434 - (21%)
Similarity:145/434 - (33%) Gaps:143/434 - (32%)


- Green bases have known domain annotations that are detailed below.


  Fly    71 ASMVLLSNIHINTPK----STDRAKRIRRPIAFDYDGSGGSCSSSFLAPSTPERLPGLSRSVSFE 131
            |.:..||.||  ||:    ..|.|..:.|..: ....|.||.||...||.:..:.|.||.:    
Human   104 ADLDALSPIH--TPQRSVPEVDPAATMPRSQS-QQRTSAGSYSSPPPAPYSAPQAPALSVT---- 161

  Fly   132 LPETPLRTGNRSASQPSSQLTPHKARGGSLKRKHSTFREKLYSDADGVALPADENDPRDLN--DS 194
               .|:...:...::..|:|  ...||.:          |:.|:.....:|..| |..||.  ..
Human   162 ---GPITANSEQIARLRSEL--DVVRGNT----------KVMSEMLTEMVPGQE-DSSDLELLQE 210

  Fly   195 LDADCRRLEDISPILNVKRRKHQDRGIEDLMRSSTPKTASSQPTFLQVGAAAGRNPPLGAKRTFR 259
            |:..||.::  ..|:.:..|...:...|:|:..:.    .....||:                :.
Human   211 LNRTCRAMQ--QRIVELISRVSNEEVTEELLHVND----DLNNVFLR----------------YE 253

  Fly   260 KFQSFSPSKMQPNATRPLLRQNAIRALEHTPEKRKEQRVLAEIHP-QPAVADAVL----PPLDLA 319
            :|:.:...:...||:..:|.       |.|.:.      |.::.| .|||...::    ||..|:
Human   254 RFERYRSGRSVQNASNGVLN-------EVTEDN------LIDLGPGSPAVVSPMVGNTAPPSSLS 305

  Fly   320 ALLDAPILGEPS-----RQLEQ-----------------------TVT---------TVPSLD-- 345
            :.|....||..|     ..|:|                       |||         ...:||  
Human   306 SQLAGLDLGTESVSGTLSSLQQCNPRDGFDMFAQTRGNSLAEQRKTVTYEDPQAVGGLASALDNR 370

  Fly   346 -------------------DFSLTPSKANLIDLELMAPAADGPFATDDYLVRHASNFS------- 384
                               :..|.|..:.|| .:.|.|.|. |...||..|...::..       
Human   371 KQSSEGTFLSSAQKRGRGGESDLEPIDSWLI-TQGMIPVAQ-PSVMDDIEVWLRTDLKGDDLEEG 433

  Fly   385 -YAPTLNSILEESPIKAAAAFLPGKLPLP--KTP-PSVTKSGRK 424
             .:...:..|||   :|.||.:...||.|  :.| |:...||||
Human   434 VTSEEFDKFLEE---RAKAAEMVPDLPSPPMEAPAPASNPSGRK 474

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG42816NP_730301.3 rim_protein <81..1451 CDD:130324 87/424 (21%)
ABCA12XP_011509253.1 rim_protein 7..>86 CDD:130324
rim_protein 752..2579 CDD:130324
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.