DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG42816 and Abca9

DIOPT Version :9

Sequence 1:NP_730301.3 Gene:CG42816 / 39977 FlyBaseID:FBgn0261998 Length:1459 Species:Drosophila melanogaster
Sequence 2:NP_671753.2 Gene:Abca9 / 217262 MGIID:2386796 Length:1623 Species:Mus musculus


Alignment Length:1580 Identity:390/1580 - (24%)
Similarity:681/1580 - (43%) Gaps:292/1580 - (18%)


- Green bases have known domain annotations that are detailed below.


  Fly    11 YKTGFLAVQQALS----QVHIKHK-CKEFNKTQGDIKFPPIKDLPSPPIFKSDNSSTLQDVGIMI 70
            ::.||:|.|.|::    ::...|. .:|.....|       .::..||.......:|  |..|..
Mouse   174 WEKGFVAFQAAINAGIIEMITNHSVMEELMSVIG-------SNMKMPPFIAQGGVAT--DFFIFF 229

  Fly    71 IVIIIFFVVVSLTKSIVEEKELQLKVTLNLMGVGSCLQWVAWYIQTFIIFLIGSSIITLFWK--- 132
            .||....::..|:.:|.:|:: .:...:.:||:.....|::|.:......|:.:.:::|..|   
Mouse   230 CVISFSSLIYYLSVNITQERQ-YMTTLMAMMGLRESAFWLSWSLMYAGFILVVAVLMSLIVKSAQ 293

  Fly   133 -LVLPNSEISFMPFTHWSMALFVLLVLSHCTICFSFLMSSLISTTYRISLVTF-LALIATYLPFL 195
             :||....:.|:.|..:.::|..|          |||||.||...:...|..| |.:....|.|.
Mouse   294 VVVLTGFMVVFLLFLFYGLSLITL----------SFLMSVLIKKPFLTGLAIFILTVFWGSLGFT 348

  Fly   196 IL--HSKGCSEGLNVFLSLF-LLSGLQVLVVGICMWEDYGEGLQWGNLFETSWPGGTLSVGYILL 257
            .|  |.....|....|||.| ..:|:..|:     ..||...   .|:...| |..:..:...|.
Mouse   349 ALYKHLPAFVEWTLCFLSPFAFTTGMAQLI-----HLDYDVN---SNVNLNS-PNNSYLIMATLF 404

  Fly   258 VMILASFLSLLLCLYLEKIRPGPYGVPQ-PWHFPCTRCCSTESLLPYSRLFNRIFGIYSAAPDEE 321
            :::|.:.|.|:|.||.:||....||..: |..|           |..|..|.|....:....:|.
Mouse   405 MLVLDALLYLVLALYFDKITLSKYGHQRSPLFF-----------LKSSYWFKRRGASHVVLENEI 458

  Fly   322 RPD------LQLIEPDPVDKIAGVQIRGLSKTF----GKMEVVKNVSFDMFEGQITVLMGHNGAG 376
            ..|      |:.:.|:...|.| ::|:.|.|.:    ||:|.::.:.||::|||||.|:||:|||
Mouse   459 DSDPSLNDSLEPVSPEFQGKEA-IRIKNLKKEYSGKHGKVEALRGLGFDIYEGQITALLGHSGAG 522

  Fly   377 KTTLISMLAGFISPTSGTALINGFDIRQ--ERRQAQRCIGLCPQQNVLFKHLSSVSHIQLFSRLR 439
            |||||:.|:|...||:|:..|....:.:  :........|:|||.||.|..|:...:::||::::
Mouse   523 KTTLINTLSGLSPPTTGSVTIYNQTVSEMDDSDAVLTITGVCPQSNVQFGFLTVRENLRLFAKIK 587

  Fly   440 GLRGAEVKSEVQNYLKKLNLQEKKRLAARNLSGGTQRRLSVACSLCGGVKVLICDEPSTGLDPSA 504
            |:...||:.|||..|:.|.::..:.:.|:|||||.:|:|::..::.|..:||:.|||:.||||.:
Mouse   588 GILPHEVEQEVQQVLQDLEMENIQDILAQNLSGGQKRKLTLGIAILGDPQVLLLDEPTAGLDPLS 652

  Fly   505 RRELWRLILEAKEGCTILLTTHQLDDGEVLGDRVVIISDGQLRCIGSLPFLKKQVDASCLITCEA 569
            |..:|.|:.|.:.|..|:.:|..:|:.::|.||.|.||:|:|:|.||..||||:......::...
Mouse   653 RHRIWNLLKERRAGRVIVFSTQFMDEADILADRKVFISNGRLKCAGSSLFLKKKWGIGYHLSLHL 717

  Fly   570 RKRCDLEKLTSLISRHVGTIQPFSIKGRDVCYKLPLSKSKYFSSLFRDLESQMNILGVRGFSLSS 634
            .:.||.|.:|||:.:|:...:..:.....:.|.|||.::..|..|:|||:...| .|:..:.:|.
Mouse   718 NEACDPEGITSLVKKHISDARLTTQSEERLVYILPLERTNKFPDLYRDLDRCSN-QGIEDYGVSM 781

  Fly   635 VSLEEIFMSFGAEDLNSRQSGGAEKRDDDDRDDDEENEVQ---------DGNVRSCKKQWR---- 686
            .:|.|:|:....:.:......|...|...|...|.|:.|:         .|:..|....||    
Mouse   782 TTLNEVFLKLEGKSMADESDVGICGRLQSDGARDMESLVELEQVLSLDSSGSSVSGMALWRQQLC 846

  Fly   687 AMMTKKVMALYDNKVYFLLLLLTPIVYYITTLM--MATKPHHSGRPTFNISDYGVDKFTILLSV- 748
            |:...:...|.:.:...:.:||...:.::..|:  :..|.:|..      ..:|:......||. 
Mouse   847 AVAKVRFFKLKNERKSLMTVLLLFGISFVPQLLEHLVYKVYHKS------YSWGLSPSMYFLSPG 905

  Fly   749 -----PVSKSYTEERRADSIASLIKGKLKLIVVSEQIKDYVDDKWKSREGRREINFVSMAIDTGD 808
                 |::......|...||.:.:....:..:..:.      |...:|.|..|..:.......|:
Mouse   906 QPPQDPLTHLLVINRTGSSIDNFVHALRQQGIALDL------DALGTRNGTEEALYNGAITVLGE 964

  Fly   809 RTGL---IGWVGPRHYVHAAPMILNLVYNALAQELIGPKISIEVTSVPFTLRKKEDFLISNNGDI 870
            ...|   :.....|  ::..|::::::.|.    |:|...|.|......:...:|..|       
Mouse   965 EKALRFSVACNAKR--LNCFPVLMDIISNG----LLGIFNSSERIQTDRSTVFEEHML------- 1016

  Fly   871 PIYVIGYVSIAMIIFSSA------VIQERVS--HMKMLQEV--SGLEMITYWLSHLAFDMVVFFI 925
              |..|::|.|......|      :....:|  ..|:|.::  |||....||......|:.::|:
Mouse  1017 --YEYGFMSNAFFWIPVAASLTPYIAMGSISDHKKKVLSQLWTSGLYPSAYWCGQALVDIPIYFL 1079

  Fly   926 LVL-------------------ALLLPL---YGYAP----------------------W--YLLL 944
            ::.                   :||:.:   .|||.                      |  :.|:
Mouse  1080 ILFLMQIMDSVFSSEEFISVMESLLIQIPCSIGYASSLIFMTYVISFIFRNGRKNSGIWSFFFLI 1144

  Fly   945 CVLFFTGLAGLIFIYFLISMLSATFLAVSMILLSVIIGSLILM---------ILGALALIFKMVY 1000
            ..:||. :|..|..|..:.:|..|||.....|    ||||::.         .||...  .::|:
Mouse  1145 VTIFFI-IATDINEYGFLELLICTFLVPPFTL----IGSLLIFSEVSYDSVDYLGTSE--SQLVF 1202

  Fly  1001 VAIYVANMHPLIAGY--NCIQKCFHYMSLCGSYISEAQNPLSENLTSDEMYCINPLAFLEPRCVC 1063
            :|:.:..:|.|:..:  .|:::.....||                      .::|:..:.||   
Mouse  1203 LALLIPYLHFLLFFFILRCLERYLRKKSL----------------------RVDPVFRISPR--- 1242

  Fly  1064 VNPMTWPDMLVMLGTAIILFLLIMFFEYGSCVWYRCKGCCPYSSKGSIEDPKVSREAEKIR---A 1125
                                         ||      ...|...:...||..|  :.|::|   |
Mouse  1243 -----------------------------SC------PAVPNPEEPGEEDEDV--QMERVRTTGA 1270

  Fly  1126 MDADQIGTRALVV-NGVSKKY-----GC-----DQLAVNNISFALKPSHCVGLLGPNGAGKTTTF 1179
            |...|...:.::: :.:.|:|     .|     .::|..||||.:|....:||||.|||||:||.
Mouse  1271 MATLQTDEKPVIIASCLRKEYIGRTKRCFSKMKKKIATRNISFCVKKGEVLGLLGHNGAGKSTTI 1335

  Fly  1180 KMIVGEHSIDKGNIYISGYSMRMKRNKAMKELGYCPQSDSFFEFLTGRQLLKVFLLIWGFPSKDL 1244
            .||.|:.....|.:::.|..    ...|:..||||||.:..:..||.::.|:::..:.|...||.
Mouse  1336 SMITGDTIPTAGQVFLKGSG----GGAALGFLGYCPQENVLWPNLTVKEHLELYAAVKGLKKKDA 1396

  Fly  1245 NKRCEKLADQFGFRKHLDKKITYYSGGTKRKINAAVA-CGANSLICLDEPSAGVDPASRRHVWTI 1308
            .....:|.:....:.||...:...|.|.|||:...:: .|...::.|||||.|:||..::.:|..
Mouse  1397 VVTITRLVNALKLQDHLKALVRTLSEGVKRKLCFVLSILGNPPVVLLDEPSTGMDPEGQQQMWQA 1461

  Fly  1309 INEV-AQQGKAVLLTSHNMDEINALCSKSVILVDGSIYAMGSVQHVKNKIAKGMTLKLVV----N 1368
            |... ....:..|||:|.|.|..|:|.:..|:|.|.:..:||:||:|:|..|...|::.|    .
Mouse  1462 IRATFTNTERGALLTTHYMAEAEAVCDRVAIMVSGRLRCIGSIQHLKSKFGKDYLLEMKVKTPSQ 1526

  Fly  1369 VQPDNMVAMLTKIEDDIYMTYPNAELKEKYEFSGRLTFQISKD--TSWSEIFEYVEGNRSSWHLE 1431
            |:|         :..:|...:|.|..:|:|  |..:.:::..:  ...||.|..:|..:.::.||
Mouse  1527 VEP---------LNTEIMRLFPQAARQERY--SSLMVYKLPVEDVRPLSEAFFKLERLKENFDLE 1580

  Fly  1432 DYSLSQPSLEDAFEEIAEER 1451
            :|||||.:||..|.|:::|:
Mouse  1581 EYSLSQSTLEQVFLELSKEQ 1600

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG42816NP_730301.3 CcmA 336..643 CDD:224054 112/312 (36%)
ABC_subfamily_A 339..556 CDD:213230 86/222 (39%)
ABC2_membrane_3 <821..1018 CDD:289468 50/263 (19%)
CcmA 1135..1450 CDD:224054 100/333 (30%)
ABC_subfamily_A 1136..1354 CDD:213230 72/230 (31%)
Abca9NP_671753.2 rim_protein <128..1600 CDD:130324 389/1578 (25%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E2759_KOG0059
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D131191at2759
OrthoFinder 1 1.000 - - FOG0000051
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 1 0.900 - - OOG6_100045
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
54.720

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